chore: update built-in LSP server versions

Author: abose

src/config.json

@@ -35,8 +35,8 @@
         "extensionTakedownURL": "https://updates.phcode.io/extension_takedown.json",
         "lsp_server_pins": {
             "intelephense": "1.18.5",
-            "pyrefly": "1.2.0",
-            "ruff": "0.16.5"
+            "pyrefly": "1.3.2",
+            "ruff": "0.16.9"
         },
         "linting.enabled_by_default": true,
         "build_timestamp": "",