Repository navigation
Expand file tree
/
Copy pathCVB_Examples.html
More file actions
198 lines (175 loc) · 4.25 KB
/
Copy pathCVB_Examples.html
File metadata and controls
198 lines (175 loc) · 4.25 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
<html xmlns:v="urn:schemas-microsoft-com:vml"
<head> <title> Statistical Analysis of Accuracy of Methods in MOPAC </title></head>
<body>
<h2 align=center style='text-align:center'><span style='font-size:24.0pt;
mso-fareast-font-family:"Times New Roman"'> <o:p></o:p></span></h2>
<h2 align=center style='text-align:center'><font size="6">Examples of CVB for
complicated systems</font></h2>
<table border="1" cellpadding="0" cellspacing="0" style="border-collapse: collapse" bordercolor="#111111">
<tr>
<td height="21"> </td>
<td height="21"> </td>
<td height="21">Residues involved</td>
</tr>
<tr>
<td height="21"> </td>
<td height="21">1-Myoglobin (1M6C)</td>
<td height="21">154</td>
</tr>
<tr>
<td height="22"> </td>
<td height="22">Aromatase (3EQM)</td>
<td height="22">453, 454</td>
</tr>
<tr>
<td height="22"> </td>
<td height="22">Bacteriochlorophyll (4BCL)</td>
<td height="22">354, 355</td>
</tr>
<tr>
<td height="22"> </td>
<td height="22">Bovine lactoferrin (1SDX)</td>
<td height="22">54, 365</td>
</tr>
<tr>
<td height="22"> </td>
<td height="22">Cytochrome-P450 (1DT6)</td>
<td height="22">501</td>
</tr>
<tr>
<td height="22">Difficult</td>
<td height="22">DMSO Reductase (1DMS).</td>
<td height="22">[MO]775:F.MO":-"[HET]769:D.S1</td>
</tr>
<tr>
<td height="22"> </td>
<td height="22"> </td>
<td height="22"> </td>
</tr>
<tr>
<td height="22"> </td>
<td height="22"> </td>
<td height="22"> </td>
</tr>
<tr>
<td height="22"> </td>
<td height="22"> </td>
<td height="22"> </td>
</tr>
</table>
<p> </p>
<h2 align=center style='text-align:center'><span style='font-size:24.0pt;
mso-fareast-font-family:"Times New Roman"'><o:p></o:p></span></h2>
<h2 align=center style='text-align:center'><font size="6">Examples of CVB to
correct possible errors in PDB files</font></h2>
<table border="1" cellpadding="0" cellspacing="0" style="border-collapse: collapse" bordercolor="#111111">
<tr>
<td> </td>
<td> </td>
<td>Residues involved</td>
</tr>
<tr>
<td> </td>
<td>Alpha Tropomyosin (2B9C)</td>
<td>1, 127</td>
</tr>
<tr>
<td>aa</td>
<td>Cobalamin (2V3N)</td>
<td>414, 416</td>
</tr>
<tr>
<td> </td>
<td>Coiled Coil (2V66)</td>
<td>59</td>
</tr>
<tr>
<td> </td>
<td> </td>
<td> </td>
</tr>
<tr>
<td> </td>
<td> </td>
<td> </td>
</tr>
<tr>
<td> </td>
<td> </td>
<td> </td>
</tr>
<tr>
<td> </td>
<td> </td>
<td> </td>
</tr>
<tr>
<td> </td>
<td> </td>
<td> </td>
</tr>
<tr>
<td> </td>
<td> </td>
<td> </td>
</tr>
</table>
<h2 align=center style='text-align:center'><span style='font-size:24.0pt;
mso-fareast-font-family:"Times New Roman"'><o:p></o:p></span></h2>
<h2 align=center style='text-align:center'><font size="6">Examples of CVB to
correct errors in PMx files</font></h2>
<table border="1" cellpadding="0" cellspacing="0" style="border-collapse: collapse" bordercolor="#111111">
<tr>
<td> </td>
<td> </td>
<td>Residues involved</td>
</tr>
<tr>
<td> </td>
<td> </td>
<td> </td>
</tr>
<tr>
<td> </td>
<td> </td>
<td> </td>
</tr>
<tr>
<td> </td>
<td> </td>
<td> </td>
</tr>
<tr>
<td> </td>
<td> </td>
<td> </td>
</tr>
<tr>
<td> </td>
<td> </td>
<td> </td>
</tr>
<tr>
<td> </td>
<td> </td>
<td> </td>
</tr>
<tr>
<td> </td>
<td> </td>
<td> </td>
</tr>
<tr>
<td> </td>
<td> </td>
<td> </td>
</tr>
<tr>
<td> </td>
<td> </td>
<td> </td>
</tr>
</table>
<p dir="rtl"> </p>
</body>
</html>