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refactor(metadata-protocol): move the publish batch's seed apply and its pending-declaration collection out of protocol.ts into protocol-publish-batch.ts (#25467 cut 14) #50371

Job	Run time
filter	29s
Build Core	9m 53s
Test Core (7/8)	19m 49s
Test Core (5/8)	12m 5s
Test Core (8/8)	13m 38s
Test Core (3/8)	20m 29s
Test Core (4/8)	18m 14s
Test Core (1/8)	11m 23s
Test Core (2/8)	20m 50s
Test Core (6/8)	16m 46s
Dogfood Regression Gate	10s
Dogfood Regression Gate (${{ matrix.shard }}/3)	0s
Temporal Conformance (live PG + MySQL)	0s
Dogfood Verify CLI	0s
Build UI Deps	0s
Lint UI	0s
Type Check UI	0s
Test UI (${{ matrix.shard }}/16)	0s
Build Docs	0s
Build & E2E UI	0s
Test Core	33s
Test Core (7/8)	20m 46s
filter	29s
Build Docs	-1331s
Build & E2E UI	-1331s
Build Core	9m 53s
Test UI (${{ matrix.shard }}/16)	-1331s
Temporal Conformance (live PG + MySQL)	-1331s
Test Core (1/8)	11m 23s
Build UI Deps	-1331s
Type Check UI	-1331s
Test Core (5/8)	12m 5s
Test Core (3/8)	20m 29s
Dogfood Regression Gate	10s
Test Core (8/8)	13m 38s
Test Core (6/8)	16m 46s
Lint UI	-1331s
Test Core (4/8)	18m 14s
Dogfood Regression Gate (${{ matrix.shard }}/3)	-1338s
Dogfood Verify CLI	-1338s
Test Core (2/8)	20m 50s
Test Core	30s
	1h 29m 39s