From 74dcb7195f3e2434d7bb31835eb35ba707898d2e Mon Sep 17 00:00:00 2001
From: Sam Schiano <125507018+Schiano-NOAA@users.noreply.github.com>
Date: Fri, 2 Oct 2026 15:49:24 -0400
Subject: [PATCH] fix issue not rendering report without bib files

---
 R/create_template.R                           | 6 +++---
 R/utils_tex.R                                 | 4 +++-
 inst/resources/formatting_files/in-header.tex | 2 --
 3 files changed, 6 insertions(+), 6 deletions(-)

diff --git a/R/create_template.R b/R/create_template.R
index d940172ae..e10567787 100644
--- a/R/create_template.R
+++ b/R/create_template.R
@@ -603,7 +603,7 @@ create_template <- function(
         # customize titlepage tex
         if (!file.exists(file_dir, "support_files", "_titlepage.tex") | !is.null(species)) create_titlepage_tex(office = office, subdir = supdir, species = species)
         # customize in-header tex
-        if (!file.exists(file_dir, "support_files", "in-header.tex") | !is.null(species)) create_inheader_tex(species = species, year = year, subdir = supdir)
+        if (!file.exists(file_dir, "support_files", "in-header.tex") | !is.null(species)) create_inheader_tex(species = species, year = year, subdir = supdir, bib_file = bib_file)
       }
     } else {
       #### Copy template files to report folder ----
@@ -621,7 +621,7 @@ create_template <- function(
         # customize titlepage tex
         create_titlepage_tex(office = office, subdir = supdir, species = species)
         # customize in-header tex
-        create_inheader_tex(species = species, year = year, subdir = supdir)
+        create_inheader_tex(species = species, year = year, subdir = supdir, bib_file = bib_file)
         # Copy species image from package
         file.copy(spp_image, supdir, overwrite = FALSE) |> suppressWarnings()
         # Copy us doc logo
@@ -677,7 +677,7 @@ create_template <- function(
           # customize titlepage tex
           create_titlepage_tex(office = office, subdir = supdir, species = species)
           # customize in-header tex
-          create_inheader_tex(species = species, year = year, subdir = supdir)
+          create_inheader_tex(species = species, year = year, subdir = supdir, bib_file = bib_file)
           # Copy species image from package
           file.copy(spp_image, supdir, overwrite = FALSE) |> suppressWarnings()
           # Copy us doc logo
diff --git a/R/utils_tex.R b/R/utils_tex.R
index c6d98b276..48f176a1c 100644
--- a/R/utils_tex.R
+++ b/R/utils_tex.R
@@ -64,7 +64,7 @@ create_titlepage_tex <- function(office = "",
 #' @return Create an in-header latex document that dynamically changes based on
 #' the species and year along with other factors.
 #' @export
-create_inheader_tex <- function(species = NULL, year = NULL, subdir) {
+create_inheader_tex <- function(species = NULL, year = NULL, subdir, bib_file = TRUE) {
   if (is.null(year)) {
     year <- format(as.POSIXct(Sys.Date(), format = "%YYYY-%mm-%dd"), "%Y")
   }
@@ -73,6 +73,7 @@ create_inheader_tex <- function(species = NULL, year = NULL, subdir) {
   )
   if (is.null(species)) {
     to_add <- paste(
+      {if (isTRUE(bib_file)) "% Link journals package\n\\usepackage{journals-bibnames}\n\n"},
       "\\usepackage[headsepline=0.005pt:,footsepline=0.005pt:,plainfootsepline,automark]{scrlayer-scrpage}", "\n",
       "\\clearpairofpagestyles", "\n",
       "\\ohead[]{\\headmark} \\cofoot[\\pagemark]{\\pagemark}", "\n",
@@ -85,6 +86,7 @@ create_inheader_tex <- function(species = NULL, year = NULL, subdir) {
     lines <- append(lines, to_add)
   } else {
     to_add <- paste(
+      {if (isTRUE(bib_file)) "% Link journals package\n\\usepackage{journals-bibnames}\n\n"},
       "\\usepackage[headsepline=0.005pt:,footsepline=0.005pt:,plainfootsepline,automark]{scrlayer-scrpage}", "\n",
       "\\clearpairofpagestyles", "\n",
       "\\ohead[]{\\headmark} \\cofoot[\\pagemark]{\\pagemark}", "\n",
diff --git a/inst/resources/formatting_files/in-header.tex b/inst/resources/formatting_files/in-header.tex
index d68c2a2ee..3e1d063b8 100644
--- a/inst/resources/formatting_files/in-header.tex
+++ b/inst/resources/formatting_files/in-header.tex
@@ -41,5 +41,3 @@
 % \addtokomafont{subsection}{\subsectionfont}
 % \addtokomafont{subsubsection}{\subsubsectionfont}
 
-% Link journals package
-\usepackage{journals-bibnames}