setup-nextflow/.github/workflows/example.yml at master · nf-core/setup-nextflow · GitHub

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name: Example builds

on:
  push:
    branches:
      - master
      # https://docs.renovatebot.com/key-concepts/automerge/#branch-vs-pr-automerging
      - "renovate/**" # branches Renovate creates
  pull_request:
  workflow_dispatch:
  release:
    types: [published]

jobs:
  example-usage:
    runs-on: ubuntu-latest

    strategy:
      fail-fast: false
      matrix:
        nextflow_version:
          - "21.10.3"
          - "22.04"
          - "22.03.1-edge"
          - "24.10.1"
          - "latest"
          - "latest-stable"
          - "latest-edge"
          - "latest-everything"
        all_distribution:
          - true
          - false

    steps:
      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7
      - uses: actions/setup-node@949feb2413d6458794dcd2491c4babbbce0c15c1 # v7
        with:
          node-version: 24
          cache: "npm"
      - run: npm ci
      - run: npm run build
      - run: npm run package
      - uses: ./
        with:
          version: ${{ matrix.nextflow_version }}
          all: ${{ matrix.all_distribution }}
      - run: nextflow -v

  example-skip-java-install:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7
      - uses: actions/setup-node@949feb2413d6458794dcd2491c4babbbce0c15c1 # v7
        with:
          node-version: 24
          cache: "npm"
      - run: npm ci
      - run: npm run build
      - run: npm run package
      # GitHub-hosted runners ship with Java, act containers do not
      - uses: actions/setup-java@b843ebf9b913146b38da2eaa7aeddf76074ae1ad # v6
        if: ${{ env.ACT }}
        with:
          java-version: 25
          distribution: temurin
      # Rely on the Java that is already present on the runner
      - uses: ./
        with:
          install-java: false
      - run: nextflow -v

  example-secrets:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7
      - uses: actions/setup-node@949feb2413d6458794dcd2491c4babbbce0c15c1 # v7
        with:
          node-version: 24
          cache: "npm"
      - run: npm ci
      - run: npm run build
      - run: npm run package
      - uses: ./
        with:
          version: "latest-stable"
          secrets: |
            MY_TEST_SECRET=hello_world
            ANOTHER_SECRET=foo_bar
      - name: Verify secrets were set
        run: |
          [[ "$(nextflow secrets get MY_TEST_SECRET)" == "hello_world" ]]
          [[ "$(nextflow secrets get ANOTHER_SECRET)" == "foo_bar" ]]

  example-maximized-build-space:
    runs-on: ubuntu-latest
    steps:
      - uses: easimon/maximize-build-space@fc881a613ad2a34aca9c9624518214ebc21dfc0c # v10
      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7
      - uses: actions/setup-node@949feb2413d6458794dcd2491c4babbbce0c15c1 # v7
        with:
          node-version: 24
          cache: "npm"
      - run: npm ci
      - run: npm run build
      - run: npm run package
      - uses: actions/setup-java@b843ebf9b913146b38da2eaa7aeddf76074ae1ad # v6
        if: ${{ env.ACT}}
        with:
          java-version: 25
          distribution: temurin
      - uses: ./
      - run: nextflow -v