From 397b595a024a1d3e9df0e4767cec4b314d4d90a1 Mon Sep 17 00:00:00 2001 From: Maxime U Garcia Date: Tue, 13 Oct 2026 11:55:59 +0200 Subject: [PATCH 1/2] Add release roadmap for rnaseq and sarek consumability Ignore ROADMAP.md as a local working document. Generated by OpenCode --- .gitignore | 1 + CHANGELOG.md | 1 + 2 files changed, 2 insertions(+) diff --git a/.gitignore b/.gitignore index a35a3b66..72340ee0 100644 --- a/.gitignore +++ b/.gitignore @@ -15,3 +15,4 @@ tmp/ .vscode modules/nf-*/**/tests/ subworkflows/nf-*/**/tests/ +ROADMAP.md diff --git a/CHANGELOG.md b/CHANGELOG.md index e7103a14..24033930 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -22,6 +22,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 - [#152](https://github.com/nf-core/references/pull/152) - Add `manifest.diagram` to `nextflow.config` - [#154](https://github.com/nf-core/references/pull/154) - Added `--hisat2_skip_splice_sites` parameter to skip splice site extraction for prokaryotic genomes - [#155](https://github.com/nf-core/references/pull/155) - Added species-specific STAR index parameters (`--star_sjdbOverhang`, `--star_genomeSAindexNbases`) with per-genome asset file configuration +- [#XXX](https://github.com/nf-core/references/pull/XXX) - Add release roadmap for rnaseq and sarek consumability ### Changed From 5074a838df78851639d430a25a22d08a25dfd142 Mon Sep 17 00:00:00 2001 From: Maxime U Garcia Date: Tue, 13 Oct 2026 11:57:21 +0200 Subject: [PATCH 2/2] Update changelog entry with PR number #159 Generated by OpenCode --- CHANGELOG.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 24033930..97312acb 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -22,7 +22,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 - [#152](https://github.com/nf-core/references/pull/152) - Add `manifest.diagram` to `nextflow.config` - [#154](https://github.com/nf-core/references/pull/154) - Added `--hisat2_skip_splice_sites` parameter to skip splice site extraction for prokaryotic genomes - [#155](https://github.com/nf-core/references/pull/155) - Added species-specific STAR index parameters (`--star_sjdbOverhang`, `--star_genomeSAindexNbases`) with per-genome asset file configuration -- [#XXX](https://github.com/nf-core/references/pull/XXX) - Add release roadmap for rnaseq and sarek consumability +- [#159](https://github.com/nf-core/references/pull/159) - Add release roadmap for rnaseq and sarek consumability ### Changed