Skip to content

Pull requests: nf-core/modules

New pull request New
181 Open 8,498 Closed
181 Open 8,498 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

Update diamond modules to the latest version
#11940 opened Jun 9, 2026 by sofstam Contributor Loading…
17 tasks
Add plink_gwas_regenie subworkflow
#11938 opened Jun 9, 2026 by lyh970817 Contributor • Draft
8 of 10 tasks
Add plink_fit_regenie subworkflow
#11937 opened Jun 9, 2026 by lyh970817 Contributor • Draft
8 of 10 tasks
Add new component cnvkit/segment
#11936 opened Jun 9, 2026 by aadecock Contributor Loading…
12 of 17 tasks
1
@aadecock
Add new refinegems nf-core module with config-generation interface
#11935 opened Jun 9, 2026 by Copilot AI • Draft
1
@brovolia
POC Use of nfcore.utils for R templace
#11933 opened Jun 9, 2026 by LouisLeNezet Contributor Loading…
17 tasks
@LouisLeNezet
3
Create fgumi/duplexmetrics size/m
#11931 opened Jun 9, 2026 by SPPearce Contributor Loading…
New module savana/cna Ready for Review
#11926 opened Jun 8, 2026 by manascripts Member Loading…
11 of 17 tasks
feat: chelae/trim
#11896 opened Jun 5, 2026 by emmcauley Contributor Loading…
12 of 17 tasks
1
Add new nf-core memote module with snapshot report output and nf-test coverage size/m
#11893 opened Jun 5, 2026 by Copilot AI • Draft
1
@brovolia
8
drop ext.when from modules size/xl
#11880 opened Jun 4, 2026 by matthdsm Contributor Loading…
17 tasks
Add snpclustering subworkflow
#11879 opened Jun 4, 2026 by dbaku42 Contributor Loading…
Update DEEPVARIANT/* modules to support phasing.
#11859 opened Jun 4, 2026 by awgymer Contributor Loading…
17 tasks
2
New module savana/to Ready for Review
#11849 opened Jun 3, 2026 by manascripts Member Loading…
11 of 14 tasks
9
Add new component: trtools_dumpstr Ready for Review
#11848 opened Jun 3, 2026 by KondratievaOlesya Loading…
13 tasks done
1
23
Update to topic isoseq3/tag
#11844 opened Jun 3, 2026 by bhargava-morampalli Contributor Loading…
17 tasks
1
@bhargava-morampalli
3
New module bwafastalign-mem size/l
#11840 opened Jun 3, 2026 by peterpru Member Loading…
17 tasks
@ramprasadn @peterpru
8
updated stringtie Ready for Review size/xl
#11832 opened Jun 2, 2026 by khersameesh24 Contributor Loading…
3 tasks
1
2
New module baysor Ready for Review size/l
#11790 opened May 29, 2026 by khersameesh24 Contributor Loading…
4 tasks
1
14
Add varnet (https://github.com/skandlab/VarNet)
#11787 opened May 29, 2026 by kiranchari Loading…
1 task
25
Add regenie/runl1 module Ready for Review
#11768 opened May 26, 2026 by lyh970817 Contributor Loading…
14 tasks done
1
feat: support task.ext.args in sentieon/gvcftyper size/xs
#11763 opened May 26, 2026 by nicorap Contributor Loading…
11 of 14 tasks
2
Upgrade environment schema to support additional scenarios
#11758 opened May 25, 2026 by toniher Member Loading…
8
Add dotseq/dotseq
#11742 opened May 21, 2026 by pinin4fjords Member Loading…
7 tasks done
2
feat(custom): orfnormalise + orfmerge modules + orftable_fasta_gtf_buildorfcatalogue subworkflow
#11740 opened May 21, 2026 by pinin4fjords Member Loading…
5 tasks done
1
ProTip! Add no:assignee to see everything that’s not assigned.