From 0267f1a88cf1c5c22f1f8b72a4f441504b749bd7 Mon Sep 17 00:00:00 2001 From: Cvicnaire Date: Wed, 14 Oct 2026 11:16:49 -0400 Subject: [PATCH] pkgdown: add mergeDifexp() and searchExternal() to the reference index build_reference_index() fails on the release PR because neither topic is listed. mergeDifexp joins compareSignatures; searchExternal joins writeSignatureSearchScript under a section for searching beyond the repository. Co-Authored-By: Claude Fable 5.1 --- _pkgdown.yml | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/_pkgdown.yml b/_pkgdown.yml index e11ef13..43ba06b 100755 --- a/_pkgdown.yml +++ b/_pkgdown.yml @@ -109,6 +109,7 @@ reference: desc: ~ contents: - '`compareSignatures`' + - '`mergeDifexp`' - title: Enrichment Analysis desc: ~ @@ -128,9 +129,10 @@ reference: - '`hypergemAvailable`' - '`hypergemExport`' - - title: Connectivity Search - desc: Write a script that searches LINCS for perturbations that mimic or reverse a signature + - title: Search Beyond the Repository + desc: Ask Rummagene, RummaGEO and CORESH what resembles a signature, or write a script that searches LINCS for perturbations that mimic or reverse it contents: + - '`searchExternal`' - '`writeSignatureSearchScript`' - title: Build Signature Objects