Issues

• [Bug] Feather-UNI2 seems to run CONCHv1.5 patch encoder

  bug
  mahmoodlab/TRIDENT#239 · Filter by author rebki opened on Sep 15, 2026
  2

• [Question] How to run Trident feature extraction on S2Omics-generated ROI pickle files

  question
  mahmoodlab/TRIDENT#221 · Filter by author smengmeng30-dev opened on Jun 25, 2026
  1

• [Bug] Dependency conflict when coverting .vsi to .tiff using the Converter.

  bug
  mahmoodlab/TRIDENT#180 · Filter by author ZhaoxiangSimonCai opened on Nov 21, 2025

• Edge Cases when binding to nearest level

  mahmoodlab/TRIDENT#175 · Filter by author FloCF opened on Nov 8, 2025
  1

• [Feature] Can you add Plip Foundation Model ?

  enhancement
  mahmoodlab/TRIDENT#152 · Filter by author ascklasn opened on Sep 16, 2025
  1

• [Feature] Performance Issue: Slow thumbnail generation for single-layer TIFF files in OpenSlideWSI

  enhancement
  mahmoodlab/TRIDENT#149 · Filter by author XinhengLyu opened on Aug 31, 2025
  2

• [Question] How are coords stored in h5?

  question
  mahmoodlab/TRIDENT#145 · Filter by author GeniusAng opened on Aug 14, 2025
  1

• [Bug] Incorrect units used for xres/yres in _save_tiff

  bug
  mahmoodlab/TRIDENT#135 · Filter by author Lyce24 opened on Jul 27, 2025
  2

• [Question] On the issue of using MPP and magnification respectively for patching in segment_tissue and extract_tissue_coords

  question
  mahmoodlab/TRIDENT#119 · Filter by author KKIverson opened on Jun 30, 2025
  3

• [Question]How to use local TITAN in TRIDENT？

  question
  mahmoodlab/TRIDENT#118 · Filter by author wenjiezhang79 opened on Jun 29, 2025
  3

• [Question] ABMIL training tricks

  good first issuequestion
  mahmoodlab/TRIDENT#115 · Filter by author Rainydu184 opened on Jun 12, 2025
  1

• [Question] Input Image Format: different to CLAM?

  question
  mahmoodlab/TRIDENT#111 · Filter by author katja-loewe opened on Jun 3, 2025
  3

• [Question] Specifying a Subset of WSIs to process - Multiple GPUs processing

  question
  mahmoodlab/TRIDENT#105 · Filter by author aciram7 opened on May 11, 2025
  2

• [Feature] data augmentation and stain color normalization

  enhancement
  mahmoodlab/TRIDENT#94 · Filter by author Dkaaaaa opened on Apr 22, 2025
  5

• [Question] Best way to segment slides with different seg_conf_thresh in the same dataset

  question
  mahmoodlab/TRIDENT#89 · Filter by author haydenych opened on Apr 16, 2025
  2

• [Feature] Suggestions to library installation (pyproject.toml)

  enhancement
  mahmoodlab/TRIDENT#78 · Filter by author haydenych opened on Apr 11, 2025
  1

• Are there plans to add MIL model training and inference modules?

  question
  mahmoodlab/TRIDENT#73 · Filter by author Dkaaaaa opened on Apr 8, 2025
  2

• Running TRIDENT on MPS (for Macbook)

  help wanted
  Feature

  mahmoodlab/TRIDENT#69 · Filter by author haydenych opened on Apr 4, 2025

• Suggestions to changing the code structure in models

  enhancement
  mahmoodlab/TRIDENT#68 · Filter by author haydenych opened on Apr 4, 2025
  5

• Should I use the patch size that according the best performance of each modle suggest when cropping the patch before feature extraction?

  question
  mahmoodlab/TRIDENT#66 · Filter by author Dkaaaaa opened on Apr 4, 2025
  3

• 256x256 vs 224x224 patching in FM for pathology -- Discussion

  question
  mahmoodlab/TRIDENT#45 · Filter by author gshaikovski opened on Mar 17, 2025
  6

• Error when processing large NDPI files

  mahmoodlab/TRIDENT#15 · Filter by author dakomura opened on Feb 19, 2025
  2