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SPDX-License-Identifier: CC-BY-SA-4.0

VeriSimDB Integration Guide

Complete guide for the panic-attack → verisimdb-data → hypatia → gitbot-fleet pipeline.

Architecture

┌─────────────────┐
│ Repos with      │
│ security-scan   │──┐
│ workflow        │  │
└─────────────────┘  │
                     │  panic-attack scan
                     ↓  (JSON output)
            ┌──────────────────┐
            │ verisimdb-data   │
            │ (git-backed)     │
            │ - scans/*.json   │
            │ - index.json     │
            └──────────────────┘
                     │
                     ↓  read scans
            ┌──────────────────┐
            │ hypatia          │
            │ - Logtalk rules  │
            │ - Pattern detect │
            └──────────────────┘
                     │
                     ↓  dispatch findings
            ┌──────────────────┐
            │ gitbot-fleet     │
            │ - sustainabot    │
            │ - echidnabot     │
            │ - rhodibot       │
            └──────────────────┘

Current Status (2026-02-12)

✅ Complete

  • verisimdb-data repo created and deployed (GitHub + GitLab)

  • Reusable scan-and-report workflow in panic-attacker repo

  • 3 pilot repos with security-scan workflows (echidna, ambientops, verisimdb)

  • Hypatia VeriSimDB connector (reads scans, generates Logtalk facts)

  • Hypatia pattern analyzer (summary statistics)

  • Hypatia fleet dispatcher (routes findings to bots)

  • Helper scripts for manual scan ingestion

  • Verified working: 3 repos scanned, 27 weak points found, facts generated

  • Workflow automation: scan-and-report.yml accepts optional VERISIMDB_PAT with GITHUB_TOKEN fallback (2026-02-12)

  • Caller workflows updated: All 3 pilot repos pass VERISIMDB_PAT secret to reusable workflow (2026-02-12)

⚠️ Remaining Setup

One manual step required: Create a GitHub classic PAT with repo scope and add it as VERISIMDB_PAT secret to the 3 pilot repos (see Steps 1-2 below). The workflow files are already configured to use it.

🔲 Not Yet Implemented

  • Live GraphQL endpoints for gitbot-fleet

  • Automated Logtalk rule evaluation

  • Fleet dispatcher with real bot connections

  • Temporal drift detection (comparing scans over time)

Quick Start - Manual Workflow

Scan a single repo

# 1. Run scan
cd ~/Documents/hyperpolymath-repos/echidna
panic-attack assail . --output /tmp/echidna-scan.json

# 2. Ingest result
cd ~/Documents/hyperpolymath-repos/verisimdb-data
./scripts/ingest-scan.sh echidna /tmp/echidna-scan.json

# 3. Push to remotes
git push
git push gitlab main

Scan multiple repos

cd ~/Documents/hyperpolymath-repos/verisimdb-data
./scripts/scan-all.sh echidna ambientops verisimdb
git push
git push gitlab main

Test Hypatia integration

cd ~/Documents/hyperpolymath-repos/hypatia
mix run test_integration.exs

Automated Workflow Setup (PAT Method)

Step 1: Create Personal Access Token

  1. Go to https://github.com/settings/tokens

  2. Click “Generate new token” → “Generate new token (classic)”

  3. Name: verisimdb-dispatch

  4. Scopes: Check repo (Full control of private repositories)

  5. Generate token and save it securely

Step 2: Add PAT to Scanning Repos

For each repo that will send scans (echidna, ambientops, verisimdb, etc.):

  1. Go to repo Settings → Secrets and variables → Actions

  2. Click “New repository secret”

  3. Name: VERISIMDB_PAT

  4. Value: [paste your PAT]

  5. Click “Add secret”

Step 3: Update scan-and-report Workflow ✅ DONE (2026-02-12)

The reusable workflow panic-attacker/.github/workflows/scan-and-report.yml now: - Accepts optional VERISIMDB_PAT secret via workflow_call - Uses ${{ secrets.VERISIMDB_PAT || secrets.GITHUB_TOKEN }} with automatic fallback - Uses curl -sf for silent failure detection on dispatch

Step 4: Update Calling Workflows ✅ DONE (2026-02-12)

All 3 pilot repos now pass the VERISIMDB_PAT secret: - echidna/.github/workflows/security-scan.yml - ambientops/.github/workflows/security-scan.yml - verisimdb/.github/workflows/security-scan.yml

Step 5: Test Automated Dispatch

gh workflow run security-scan.yml --repo hyperpolymath/echidna

Then check verisimdb-data for new commits:

cd ~/Documents/hyperpolymath-repos/verisimdb-data
git pull
ls scans/
cat index.json

Hypatia Pattern Detection

Loading Scans

# In Elixir REPL
scans = Hypatia.VerisimdbConnector.fetch_all_scans()
# => Loads all scans from verisimdb-data/scans/

summary = Hypatia.PatternAnalyzer.generate_summary(scans)
# => %{total_repos: 3, total_weak_points: 27, ...}

Generating Logtalk Facts

{:ok, analysis} = Hypatia.PatternAnalyzer.analyze_all_scans()
# => Writes facts to /tmp/scan_facts.lgt

Facts format:

weak_point('echidna', 'src/rust/provers/z3.rs', 'PanicPath', 'Medium').
weak_point('echidna', 'src/rust/ffi/mod.rs', 'UnsafeCode', 'High').

Pattern Detection Rules

See hypatia/prolog/pattern_detection.lgt:

  • widespread_unsafe/2 - Find patterns appearing in 3+ repos

  • critical_weak_points/2 - Count critical issues per repo

  • repo_risk_score/2 - Calculate numeric risk score

Fleet Dispatch (Placeholder)

findings = [
  %{type: :eco_score, repo: "echidna", score: 75, details: "..."},
  %{type: :proof_obligation, repo: "echidna", claim: "...", context: "..."},
  %{type: :fix_suggestion, repo: "echidna", file: "...", issue: "...", suggestion: "..."}
]

Hypatia.PatternAnalyzer.process_findings(findings)
# => Logs dispatch to sustainabot, echidnabot, rhodibot

Note: GraphQL mutations are currently logged, not sent. Bots need to expose GraphQL endpoints.

Querying Scan Data

Show all scan summaries

jq '.repos' ~/Documents/hyperpolymath-repos/verisimdb-data/index.json

Find repos with most weak points

jq -r '.repos | to_entries | sort_by(.value.weak_points) | reverse | map("\(.key): \(.value.weak_points)") | .[]' index.json

Get specific repo scan

jq '.' ~/Documents/hyperpolymath-repos/verisimdb-data/scans/echidna.json | less

Future Enhancements

Short-term

  • Create PAT and add as VERISIMDB_PAT secret (only remaining manual step)

  • Add more repos to security scanning

  • Implement actual GraphQL endpoints for gitbot-fleet

Medium-term

  • Temporal drift detection (compare scans over time)

  • Automated rule learning (detect new patterns)

  • SARIF output for GitHub Security tab

  • Fly.io deployment of verisim-api (optional, beyond flat files)

Long-term

  • GitHub App for organization-wide scanning

  • Real-time pattern detection (immediate alerts)

  • Integration with echidnabot for formal verification

  • Automated fix generation via rhodibot

Troubleshooting

Workflow fails with “Action not pinned to SHA”

Solution: Update to SHA-pinned version (see ~/.claude/CLAUDE.md for SHAs)

Repository dispatch not received

Check: 1. Is PAT configured in scanning repo secrets? 2. Does PAT have repo scope? 3. Is reusable workflow using secrets.VERISIMDB_PAT instead of GITHUB_TOKEN? 4. Check verisimdb-data workflow runs: gh run list --repo hyperpolymath/verisimdb-data

Scan fails with “unexpected argument –format”

Solution: panic-attack writes JSON automatically when --output is specified. Remove --format json flag.

Hypatia can’t load scans

Check: 1. Is verisimdb-data at ~/Documents/hyperpolymath-repos/verisimdb-data? 2. Do JSON files exist in scans/ directory? 3. Is Jason dependency installed? (cd hypatia && mix deps.get)

References

  • SONNET-TASKS.md - Original implementation tasks

  • scripts/README.md - Helper script documentation

  • hypatia/test_integration.exs - Integration test example

  • panic-attacker/.claude/CLAUDE.md - panic-attack documentation

  • verisimdb/.claude/CLAUDE.md - VeriSimDB architecture