Issues

• Vitessce requires TiffData elements in OME-TIFF XML metadata -- need to implement in upstream tools

  bug
  goeckslab/tools-mti#107 · Filter by author CameronFRWatson opened on Feb 13, 2026
  

• Update coreograph so that it writes tiled pyramidal OME-TIFF core images

  tool update
  goeckslab/tools-mti#98 · Filter by author CameronFRWatson opened on Apr 29, 2025
  

• Unify test data across tools

  enhancement
  goeckslab/tools-mti#97 · Filter by author CameronFRWatson opened on Mar 20, 2025

• Need to catch NaN values in Basic Illumination standard output as tool failure

  goeckslab/tools-mti#96 · Filter by author CameronFRWatson opened on Mar 20, 2025

• Add Zarr datatype, visualizations, and remote data support to imaging tools

  goeckslab/tools-mti#93 · Filter by author CameronFRWatson opened on Feb 14, 2025

• Add better image assertions to tool tests when we update to Galaxy v24

  goeckslab/tools-mti#72 · Filter by author CameronFRWatson opened on Jun 4, 2024
  1

• Dynamically determine chunk size for background subtraction tool

  enhancementlow priority
  goeckslab/tools-mti#70 · Filter by author CameronFRWatson opened on May 30, 2024

• Expose random seed parameter to user args for analytical tools

  goeckslab/tools-mti#52 · Filter by author CameronFRWatson opened on Apr 24, 2023

• data_column for specifying input column names and tabular metadata files for tools

  goeckslab/tools-mti#44 · Filter by author CameronFRWatson opened on Sep 26, 2022
  1

• Support for multiple supplementary masks in quantification tool

  low priority
  goeckslab/tools-mti#40 · Filter by author CameronFRWatson opened on Sep 9, 2022

• Autogating

  goeckslab/tools-mti#22 · Filter by author alliecreason opened on Jul 5, 2022
  1

• Create TMA map of cores

  goeckslab/tools-mti#19 · Filter by author alliecreason opened on Jul 5, 2022
  1