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Check pyproject/ruff migration across repositories #1

Description

@LOCEANlloydizard

Several echostack repositories have already migrated to pyproject.toml and from Flake8 to Ruff (e.g., echopype, echopop, echoshader)
This issue is to check the remaining repositories and standardize the linting configuration where appropriate

Checklist

  • echopype
  • echopop
  • echoshader
  • echopype-examples
  • echoregions
  • echodataflow
  • echodataflow-recipes
  • echolevels

Things to check

  • replace Flake8 with Ruff
  • migrate to pyproject.toml
  • keep notebook linting enabled
  • but consider excluding .ipynb from ruff format to avoid large JSON-only diffs while still running ruff check
  • update CI and pre-commit configuration accordingly

Activity

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