From c2cea31d93b68db3f90940ce41468d1a6c5ba9d3 Mon Sep 17 00:00:00 2001
From: Denis Yuen <denis.yuen@oicr.on.ca>
Date: Wed, 29 Jul 2026 13:46:12 -0400
Subject: [PATCH] update bom and version

---
 THIRD-PARTY-LICENSES.txt                         |  4 ++--
 .../generated/src/main/resources/pom.xml         | 16 ++++++++--------
 .../generated/src/main/resources/pom.xml         | 10 +++++-----
 .../generated/src/main/resources/pom.xml         | 12 ++++++------
 .../generated/src/main/resources/pom.xml         |  2 +-
 .../generated/src/main/resources/pom.xml         |  2 +-
 pom.xml                                          |  4 ++--
 support/generated/src/main/resources/pom.xml     |  2 +-
 8 files changed, 26 insertions(+), 26 deletions(-)

diff --git a/THIRD-PARTY-LICENSES.txt b/THIRD-PARTY-LICENSES.txt
index fa27ff46a..9774b5d35 100644
--- a/THIRD-PARTY-LICENSES.txt
+++ b/THIRD-PARTY-LICENSES.txt
@@ -305,8 +305,8 @@ Lists of 414 third-party dependencies.
      (Apache-2.0) Log4j Implemented Over SLF4J (org.slf4j:log4j-over-slf4j:2.0.18 - http://www.slf4j.org)
      (Eclipse Public License - v 2.0) (GNU Lesser General Public License) Logback Access Common Module (ch.qos.logback.access:logback-access-common:2.0.12 - http://logback.qos.ch/logback-access-common)
      (Eclipse Public License - v 2.0) (GNU Lesser General Public License) Logback Access Jetty 12 Module (ch.qos.logback.access:logback-access-jetty12:2.0.12 - http://logback.qos.ch/logback-access-jetty12)
-     (EPL-2.0) (LGPL-2.1-only) Logback Classic Module (ch.qos.logback:logback-classic:1.5.33 - http://logback.qos.ch/logback-classic)
-     (EPL-2.0) (LGPL-2.1-only) Logback Core Module (ch.qos.logback:logback-core:1.5.33 - http://logback.qos.ch/logback-core)
+     (EPL-2.0) (LGPL-2.1-only) Logback Classic Module (ch.qos.logback:logback-classic:1.5.35 - http://logback.qos.ch/logback-classic)
+     (EPL-2.0) (LGPL-2.1-only) Logback Core Module (ch.qos.logback:logback-core:1.5.35 - http://logback.qos.ch/logback-core)
      (Apache License, Version 2.0) (MIT License) Logstash Logback Encoder (net.logstash.logback:logstash-logback-encoder:4.11 - https://github.com/logstash/logstash-logback-encoder)
      (Apache License, Version 2.0) Lucene Core (org.apache.lucene:lucene-core:8.7.0 - https://lucene.apache.org/lucene-parent/lucene-core)
      (Apache License 2.0) Metrics Core (io.dropwizard.metrics:metrics-core:4.2.39 - https://metrics.dropwizard.io/metrics-core)
diff --git a/dockstore-cli-integration-testing/generated/src/main/resources/pom.xml b/dockstore-cli-integration-testing/generated/src/main/resources/pom.xml
index 86bb8dd5c..7f3e7b750 100644
--- a/dockstore-cli-integration-testing/generated/src/main/resources/pom.xml
+++ b/dockstore-cli-integration-testing/generated/src/main/resources/pom.xml
@@ -19,7 +19,7 @@
   <modelVersion>4.0.0</modelVersion>
   <groupId>io.dockstore</groupId>
   <artifactId>dockstore-cli-integration-testing</artifactId>
-  <version>1.18.0-SNAPSHOT</version>
+  <version>1.21.0-SNAPSHOT</version>
   <licenses>
     <license>
       <name>Apache Software License, Version 2.0</name>
@@ -30,13 +30,13 @@
     <dependency>
       <groupId>io.dockstore</groupId>
       <artifactId>dockstore-client</artifactId>
-      <version>1.18.0-SNAPSHOT</version>
+      <version>1.21.0-SNAPSHOT</version>
       <scope>compile</scope>
     </dependency>
     <dependency>
       <groupId>io.dockstore</groupId>
       <artifactId>dockstore-integration-testing</artifactId>
-      <version>1.20.0-beta.3</version>
+      <version>1.20.0</version>
       <classifier>tests</classifier>
       <scope>compile</scope>
       <exclusions>
@@ -49,7 +49,7 @@
     <dependency>
       <groupId>io.dockstore</groupId>
       <artifactId>dockstore-common</artifactId>
-      <version>1.20.0-beta.3</version>
+      <version>1.20.0</version>
       <scope>compile</scope>
       <exclusions>
         <exclusion>
@@ -61,7 +61,7 @@
     <dependency>
       <groupId>io.dockstore</groupId>
       <artifactId>dockstore-webservice</artifactId>
-      <version>1.20.0-beta.3</version>
+      <version>1.20.0</version>
       <scope>compile</scope>
       <exclusions>
         <exclusion>
@@ -73,7 +73,7 @@
     <dependency>
       <groupId>io.dockstore</groupId>
       <artifactId>openapi-java-client</artifactId>
-      <version>1.20.0-beta.3</version>
+      <version>1.20.0</version>
       <scope>compile</scope>
     </dependency>
     <dependency>
@@ -97,14 +97,14 @@
     <dependency>
       <groupId>ch.qos.logback</groupId>
       <artifactId>logback-classic</artifactId>
-      <version>1.5.33</version>
+      <version>1.5.35</version>
       <scope>runtime</scope>
       <optional>true</optional>
     </dependency>
     <dependency>
       <groupId>ch.qos.logback</groupId>
       <artifactId>logback-core</artifactId>
-      <version>1.5.33</version>
+      <version>1.5.35</version>
       <scope>runtime</scope>
       <optional>true</optional>
     </dependency>
diff --git a/dockstore-cli-reports/generated/src/main/resources/pom.xml b/dockstore-cli-reports/generated/src/main/resources/pom.xml
index 9fa6e8e6d..41e3d7a97 100644
--- a/dockstore-cli-reports/generated/src/main/resources/pom.xml
+++ b/dockstore-cli-reports/generated/src/main/resources/pom.xml
@@ -19,7 +19,7 @@
   <modelVersion>4.0.0</modelVersion>
   <groupId>io.dockstore</groupId>
   <artifactId>dockstore-cli-reports</artifactId>
-  <version>1.18.0-SNAPSHOT</version>
+  <version>1.21.0-SNAPSHOT</version>
   <licenses>
     <license>
       <name>Apache Software License, Version 2.0</name>
@@ -30,13 +30,13 @@
     <dependency>
       <groupId>io.dockstore</groupId>
       <artifactId>dockstore-webservice</artifactId>
-      <version>1.20.0-beta.3</version>
+      <version>1.20.0</version>
       <scope>compile</scope>
     </dependency>
     <dependency>
       <groupId>io.dockstore</groupId>
       <artifactId>dockstore-common</artifactId>
-      <version>1.20.0-beta.3</version>
+      <version>1.20.0</version>
       <scope>compile</scope>
       <exclusions>
         <exclusion>
@@ -48,13 +48,13 @@
     <dependency>
       <groupId>io.dockstore</groupId>
       <artifactId>dockstore-client</artifactId>
-      <version>1.18.0-SNAPSHOT</version>
+      <version>1.21.0-SNAPSHOT</version>
       <scope>compile</scope>
     </dependency>
     <dependency>
       <groupId>io.dockstore</groupId>
       <artifactId>dockstore-cli-integration-testing</artifactId>
-      <version>1.18.0-SNAPSHOT</version>
+      <version>1.21.0-SNAPSHOT</version>
       <scope>compile</scope>
     </dependency>
   </dependencies>
diff --git a/dockstore-client/generated/src/main/resources/pom.xml b/dockstore-client/generated/src/main/resources/pom.xml
index 743aa4be0..2a8c9cc4e 100644
--- a/dockstore-client/generated/src/main/resources/pom.xml
+++ b/dockstore-client/generated/src/main/resources/pom.xml
@@ -19,7 +19,7 @@
   <modelVersion>4.0.0</modelVersion>
   <groupId>io.dockstore</groupId>
   <artifactId>dockstore-client</artifactId>
-  <version>1.18.0-SNAPSHOT</version>
+  <version>1.21.0-SNAPSHOT</version>
   <licenses>
     <license>
       <name>Apache Software License, Version 2.0</name>
@@ -66,7 +66,7 @@
     <dependency>
       <groupId>io.dockstore</groupId>
       <artifactId>dockstore-common</artifactId>
-      <version>1.20.0-beta.3</version>
+      <version>1.20.0</version>
       <scope>compile</scope>
       <exclusions>
         <exclusion>
@@ -82,19 +82,19 @@
     <dependency>
       <groupId>io.dockstore</groupId>
       <artifactId>openapi-java-client</artifactId>
-      <version>1.20.0-beta.3</version>
+      <version>1.20.0</version>
       <scope>compile</scope>
     </dependency>
     <dependency>
       <groupId>io.dockstore</groupId>
       <artifactId>openapi-java-wes-client</artifactId>
-      <version>1.18.0-SNAPSHOT</version>
+      <version>1.21.0-SNAPSHOT</version>
       <scope>compile</scope>
     </dependency>
     <dependency>
       <groupId>io.dockstore</groupId>
       <artifactId>dockstore-file-plugin-parent</artifactId>
-      <version>1.18.0-SNAPSHOT</version>
+      <version>1.21.0-SNAPSHOT</version>
       <scope>compile</scope>
     </dependency>
     <dependency>
@@ -228,7 +228,7 @@
     <dependency>
       <groupId>ch.qos.logback</groupId>
       <artifactId>logback-classic</artifactId>
-      <version>1.5.33</version>
+      <version>1.5.35</version>
       <scope>compile</scope>
       <optional>true</optional>
     </dependency>
diff --git a/dockstore-file-plugin-parent/generated/src/main/resources/pom.xml b/dockstore-file-plugin-parent/generated/src/main/resources/pom.xml
index 5bff3b670..cb1f84f92 100644
--- a/dockstore-file-plugin-parent/generated/src/main/resources/pom.xml
+++ b/dockstore-file-plugin-parent/generated/src/main/resources/pom.xml
@@ -19,7 +19,7 @@
   <modelVersion>4.0.0</modelVersion>
   <groupId>io.dockstore</groupId>
   <artifactId>dockstore-file-plugin-parent</artifactId>
-  <version>1.18.0-SNAPSHOT</version>
+  <version>1.21.0-SNAPSHOT</version>
   <licenses>
     <license>
       <name>Apache Software License, Version 2.0</name>
diff --git a/openapi-java-wes-client/generated/src/main/resources/pom.xml b/openapi-java-wes-client/generated/src/main/resources/pom.xml
index 1bb00cd46..85caa7e27 100644
--- a/openapi-java-wes-client/generated/src/main/resources/pom.xml
+++ b/openapi-java-wes-client/generated/src/main/resources/pom.xml
@@ -19,7 +19,7 @@
   <modelVersion>4.0.0</modelVersion>
   <groupId>io.dockstore</groupId>
   <artifactId>openapi-java-wes-client</artifactId>
-  <version>1.18.0-SNAPSHOT</version>
+  <version>1.21.0-SNAPSHOT</version>
   <licenses>
     <license>
       <name>Apache Software License, Version 2.0</name>
diff --git a/pom.xml b/pom.xml
index dd4d5c3fa..4299da2b7 100644
--- a/pom.xml
+++ b/pom.xml
@@ -33,12 +33,12 @@
     -->
     <properties>
         <!-- the following properties set sane defaults when no revision properties are set from the command-line -->
-        <revision>1.18</revision>
+        <revision>1.21</revision>
         <changelist>.0-SNAPSHOT</changelist>
 
         <github.url>scm:git:git@github.com:dockstore/dockstore-cli.git</github.url>
         <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
-        <dockstore-core.version>1.20.0-beta.3</dockstore-core.version>
+        <dockstore-core.version>1.20.0</dockstore-core.version>
         <maven-failsafe.version>2.22.2</maven-failsafe.version>
         <maven-surefire.version>2.22.2</maven-surefire.version>
         <skipTests>false</skipTests>
diff --git a/support/generated/src/main/resources/pom.xml b/support/generated/src/main/resources/pom.xml
index 96dcabd43..bd7e6d2db 100644
--- a/support/generated/src/main/resources/pom.xml
+++ b/support/generated/src/main/resources/pom.xml
@@ -19,7 +19,7 @@
   <modelVersion>4.0.0</modelVersion>
   <groupId>io.dockstore</groupId>
   <artifactId>support</artifactId>
-  <version>1.18.0-SNAPSHOT</version>
+  <version>1.21.0-SNAPSHOT</version>
   <licenses>
     <license>
       <name>Apache Software License, Version 2.0</name>