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<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01//EN" "http://www.w3.org/TR/html4/strict.dtd">
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<title>BCES - Publications</title>
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<i style="font-weight: bold;">Grupo de Biologia Computacional, Evolutiva e de Sistemas</i>
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<h1><span class="h1_underline">Navigate</span></h1>
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<h1>BCES Publications</h1>
<table>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="Cunha2020">1</a>]
</td>
<td class="bibtexitem">
Aureliano C Cunha, Renato A Corrêa Dos Santos, Diego M Riaño-Pachon, Fábio M
Squina, Juliana V C Oliveira, Gustavo H Goldman, Aline T Souza, Lorena S
Gomes, Fernanda Godoy-Santos, Janaina A Teixeira, Fábio Faria-Oliveira,
Izinara C Rosse, Ieso M Castro, Cândida Lucas, and Rogelio L Brandão.
Draft genome sequence of wickerhamomyces anomalus lbcm1105, isolated
from cachaça fermentation.
<em>Genetics and molecular biology</em>, 43:e20190122, 2020.
[ <a href="dmrpPublications_bib.html#Cunha2020">bib</a> |
<a href="http://dx.doi.org/10.1590/1678-4685-GMB-2019-0122">DOI</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="Hurtado2019">2</a>]
</td>
<td class="bibtexitem">
Fernando Manuel Matias Hurtado, Maísa de Siqueira Pinto, Perla Novais de
Oliveira, Diego Mauricio Riaño-Pachón, Laura Beatriz Inocente, and Helaine
Carrer.
Analysis of nac domain transcription factor genes of tectona grandis
l.f. involved in secondary cell wall deposition.
<em>Genes</em>, 11, December 2019.
[ <a href="dmrpPublications_bib.html#Hurtado2019">bib</a> |
<a href="http://dx.doi.org/10.3390/genes11010020">DOI</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="Fernandes2019">3</a>]
</td>
<td class="bibtexitem">
Bruna S Fernandes, Oscar Dias, Gisela Costa, Antonio A Kaupert Neto, Tiago F C
Resende, Juliana V C Oliveira, Diego M Riaño-Pachón, Marcelo Zaiat, José
G C Pradella, and Isabel Rocha.
Genome-wide sequencing and metabolic annotation of pythium irregulare
cbs 494.86: understanding eicosapentaenoic acid production.
<em>BMC biotechnology</em>, 19:41, June 2019.
[ <a href="dmrpPublications_bib.html#Fernandes2019">bib</a> |
<a href="http://dx.doi.org/10.1186/s12896-019-0529-3">DOI</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="Castro2019">4</a>]
</td>
<td class="bibtexitem">
Juan Camilo Castro, Ivan Valdés, Laura Natalia Gonzalez-García, Giovanna
Danies, Silvia Cañas, Flavia Vischi Winck, Carlos Eduardo Ñústez, Silvia
Restrepo, and Diego Mauricio Riaño-Pachón.
Gene regulatory networks on transfer entropy (grnte): a novel
approach to reconstruct gene regulatory interactions applied to a case study
for the plant pathogen phytophthora infestans.
<em>Theoretical biology & medical modelling</em>, 16:7, April 2019.
[ <a href="dmrpPublications_bib.html#Castro2019">bib</a> |
<a href="http://dx.doi.org/10.1186/s12976-019-0103-7">DOI</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="Fonseca2019">5</a>]
</td>
<td class="bibtexitem">
Bruna Constante Fonseca, Diego Mauricio Riaño-Pachón, María-Eugenia
Guazzaroni, and Valeria Reginatto.
Genome sequence of the h2-producing clostridium beijerinckii strain
br21 isolated from a sugarcane vinasse treatment plant.
<em>Genetics and molecular biology</em>, 42:139--144, 2019.
[ <a href="dmrpPublications_bib.html#Fonseca2019">bib</a> |
<a href="http://dx.doi.org/10.1590/1678-4685-GMB-2017-0315">DOI</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="LloydEvans2019">6</a>]
</td>
<td class="bibtexitem">
Dyfed Lloyd Evans, Thandekile Thandiwe Hlongwane, Shailesh V Joshi, and Diego M
Riaño Pachón.
The sugarcane mitochondrial genome: assembly, phylogenetics and
transcriptomics.
<em>PeerJ</em>, 7:e7558, 2019.
[ <a href="dmrpPublications_bib.html#LloydEvans2019">bib</a> |
<a href="http://dx.doi.org/10.7717/peerj.7558">DOI</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="Gouvea2018">7</a>]
</td>
<td class="bibtexitem">
Paula Fagundes de Gouvêa, Aline Vianna Bernardi, Luis Eduardo Gerolamo,
Emerson de Souza Santos, Diego Mauricio Riaño-Pachón, Sergio Akira Uyemura,
and Taisa Magnani Dinamarco.
Transcriptome and secretome analysis of aspergillus fumigatus in the
presence of sugarcane bagasse.
<em>BMC genomics</em>, 19:232, April 2018.
[ <a href="dmrpPublications_bib.html#Gouvea2018">bib</a> |
<a href="http://dx.doi.org/10.1186/s12864-018-4627-8">DOI</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="Borin2018">8</a>]
</td>
<td class="bibtexitem">
Gustavo Pagotto Borin, Marcelo Falsarella Carazzolle, Renato Augusto Corrêa
Dos Santos, Diego Mauricio Riaño-Pachón, and Juliana Velasco de Castro
Oliveira.
Gene co-expression network reveals potential new genes related to
sugarcane bagasse degradation in trichoderma reesei rut-30.
<em>Frontiers in bioengineering and biotechnology</em>, 6:151, 2018.
[ <a href="dmrpPublications_bib.html#Borin2018">bib</a> |
<a href="http://dx.doi.org/10.3389/fbioe.2018.00151">DOI</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="Manfiolli2017">9</a>]
</td>
<td class="bibtexitem">
Adriana Oliveira Manfiolli, Patrícia Alves de Castro, Thaila Fernanda
Dos Reis, Stephen Dolan, Sean Doyle, Gary Jones, Diego M Riaño Pachón,
Mevlüt Ulaa, Luke M Noble, Derek J Mattern, Axel A Brakhage, Vito
Valiante, Rafael Silva-Rocha, Ozgur Bayram, and Gustavo H Goldman.
Aspergillus fumigatus protein phosphatase ppza is involved in iron
assimilation, secondary metabolite production, and virulence.
<em>Cellular microbiology</em>, 19, December 2017.
[ <a href="dmrpPublications_bib.html#Manfiolli2017">bib</a> |
<a href="http://dx.doi.org/10.1111/cmi.12770">DOI</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="Contesini2017">10</a>]
</td>
<td class="bibtexitem">
Fabiano Jares Contesini, Marcelo Vizoná Liberato, Marcelo Ventura Rubio,
Felipe Calzado, Mariane Paludetti Zubieta, Diego Mauricio Riaño-Pachón,
Fabio Marcio Squina, Fabricio Bracht, Munir S Skaf, and André Ricardo
Damasio.
Structural and functional characterization of a highly secreted
α-l-arabinofuranosidase (gh62) from aspergillus nidulans grown on sugarcane
bagasse.
<em>Biochimica et biophysica acta</em>, 1865:1758--1769, December 2017.
[ <a href="dmrpPublications_bib.html#Contesini2017">bib</a> |
<a href="http://dx.doi.org/10.1016/j.bbapap.2017.09.001">DOI</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="Nobile2017">11</a>]
</td>
<td class="bibtexitem">
Paula Macedo Nobile, Alexandra Bottcher, Juliana L S Mayer, Michael S Brito,
Ivan A Dos Anjos, Marcos Guimarães de Andrade Landell, Renato Vicentini,
Silvana Creste, Diego Mauricio Riaño-Pachón, and Paulo Mazzafera.
Identification, classification and transcriptional profiles of
dirigent domain-containing proteins in sugarcane.
<em>Molecular genetics and genomics : MGG</em>, July 2017.
[ <a href="dmrpPublications_bib.html#Nobile2017">bib</a> |
<a href="http://dx.doi.org/10.1007/s00438-017-1349-6">DOI</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="Mandelli2017">12</a>]
</td>
<td class="bibtexitem">
F Mandelli, M B Couger, D A A Paixão, C B Machado, C M Carnielli, J A
Aricetti, I Polikarpov, R Prade, C Caldana, A F Paes Leme, A Z Mercadante,
D M Riaño-Pachón, and Fabio Marcio Squina.
Thermal adaptation strategies of the extremophile bacterium thermus
filiformis based on multi-omics analysis.
<em>Extremophiles : life under extreme conditions</em>, 21:775--788,
July 2017.
[ <a href="dmrpPublications_bib.html#Mandelli2017">bib</a> |
<a href="http://dx.doi.org/10.1007/s00792-017-0942-2">DOI</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="Borin2017">13</a>]
</td>
<td class="bibtexitem">
Gustavo Pagotto Borin, Camila Cristina Sanchez, Eliane Silva de Santana,
Guilherme Keppe Zanini, Renato Augusto Corrêa Dos Santos, Angélica
de Oliveira Pontes, Aline Tieppo de Souza, Roberta Maria Menegaldo
Tavares Soares Dal'Mas, Diego Mauricio Riaño-Pachón, Gustavo Henrique
Goldman, and Juliana Velasco de Castro Oliveira.
Comparative transcriptome analysis reveals different strategies for
degradation of steam-exploded sugarcane bagasse by aspergillus niger and
trichoderma reesei.
<em>BMC genomics</em>, 18:501, June 2017.
[ <a href="dmrpPublications_bib.html#Borin2017">bib</a> |
<a href="http://dx.doi.org/10.1186/s12864-017-3857-5">DOI</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="PereiraSilva2017">14</a>]
</td>
<td class="bibtexitem">
Lilian Pereira Silva, Patrícia Alves de Castro, Thaila Fernanda Dos Reis,
Mario Henrique Paziani, Márcia Regina Von Zeska Kress, Diego M
Riaño-Pachón, Daisuke Hagiwara, Laure N A Ries, Neil Andrew Brown, and
Gustavo H Goldman.
Genome-wide transcriptome analysis of aspergillus fumigatus exposed
to osmotic stress reveals regulators of osmotic and cell wall stresses that
are saka(hog1) and mpkc dependent.
<em>Cellular microbiology</em>, 19, April 2017.
[ <a href="dmrpPublications_bib.html#PereiraSilva2017">bib</a> |
<a href="http://dx.doi.org/10.1111/cmi.12681">DOI</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="DosSantos2017">15</a>]
</td>
<td class="bibtexitem">
Renato Augusto Corrêa Dos Santos, Gustavo Henrique Goldman, and Diego Mauricio
Riaño-Pachón.
ploidyngs: Visually exploring ploidy with next generation sequencing
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<tr valign="top">
<td align="right" class="bibtexnumber">
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<td class="bibtexitem">
Natalia Coutouné, Aline Tieppo Nogueira Mulato, Diego Mauricio Riaño-Pachón,
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<td class="bibtexitem">
Thaila Fernanda Dos Reis, Benjamin M Nitsche, Pollyne Borborema Almeida
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Ries, and Gustavo H Goldman.
The low affinity glucose transporter hxtb is also involved in glucose
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Cerqueira, Fusheng Chen, Wanping Chen, Cindy Choi, Alicia Clum, Renato
Augusto Corrêa Dos Santos, André Ricardo de Lima Damásio, George
Diallinas, Tamás Emri, Erzsébet Fekete, Michel Flipphi, Susanne Freyberg,
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Comparative genomics reveals high biological diversity and specific
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<td align="right" class="bibtexnumber">
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Bruno L Mello, Anna M Alessi, Diego M Riaño-Pachón, Eduardo R deAzevedo,
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Neil C Bruce, and Igor Polikarpov.
Targeted metatranscriptomics of compost-derived consortia reveals a
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<tr valign="top">
<td align="right" class="bibtexnumber">
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Renato Augusto Correa Santos, Gustavo H. Goldman, and Diego Mauricio Riaño Pachón.
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<a href="http://biorxiv.org/content/early/2016/11/08/086488">http</a> ]
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<tr valign="top">
<td align="right" class="bibtexnumber">
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Flavia V Winck, Diego M Riaño-Pachón, and Telma T Franco.
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<td align="right" class="bibtexnumber">
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<td class="bibtexitem">
Flavia V. Winck, David O Páez Melo, Diego M. Riaño-Pachón,
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Analysis of sensitive co2 pathways and genes related to carbon uptake
and accumulation in chlamydomonas reinhardtii through genomic scale modeling
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<em>Front Plant Sci</em>, 7:43, 2016.
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<a href="http://dx.doi.org/10.3389/fpls.2016.00043">http</a> ]
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<tr valign="top">
<td align="right" class="bibtexnumber">
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<td class="bibtexitem">
Patrícia Alves de Castro, Thaila Fernanda Dos Reis, Stephen K.
Dolan, Adriana Oliveira Manfiolli, Neil Andrew Brown, Gary W. Jones, Sean
Doyle, Diego M. Riaño-Pachón, Fábio Márcio Squina,
Camila Caldana, Ashutosh Singh, Maurizio Del Poeta, Daisuke Hagiwara,
Rafael Silva-Rocha, and Gustavo H. Goldman.
The aspergillus fumigatus scha(sch9) kinase modulates saka(hog1) map
kinase activity and it is essential for virulence.
<em>Mol Microbiol</em>, Aug 2016.
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<a href="http://dx.doi.org/10.1111/mmi.13484">DOI</a> |
<a href="http://dx.doi.org/10.1111/mmi.13484">http</a> ]
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<tr valign="top">
<td align="right" class="bibtexnumber">
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<td class="bibtexitem">
Neil Andrew Brown, Laure N A. Ries, Thaila F. Reis, Ranjith Rajendran,
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Rnaseq reveals hydrophobins that are involved in the adaptation of
aspergillus nidulans to lignocellulose.
<em>Biotechnol Biofuels</em>, 9:145, 2016.
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<a href="http://dx.doi.org/10.1186/s13068-016-0558-2">DOI</a> |
<a href="http://dx.doi.org/10.1186/s13068-016-0558-2">http</a> ]
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<tr valign="top">
<td align="right" class="bibtexnumber">
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<td class="bibtexitem">
Flavia V. Winck, Ana Carolina Prado Ribeiro, Romênia Ramos Domingues,
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Thaís Bianca Brandão, Adriele Ferreira Gouvea, Alan Roger
Santos-Silva, Ricardo D. Coletta, and Adriana F. Paes Leme.
Insights into immune responses in oral cancer through proteomic
analysis of saliva and salivary extracellular vesicles.
<em>Sci Rep</em>, 5:16305, 2015.
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<a href="http://dx.doi.org/10.1038/srep16305">http</a> ]
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<tr valign="top">
<td align="right" class="bibtexnumber">
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<td class="bibtexitem">
Juan Pablo Rosas-Morales, Ximena Perez-Mancilla, Liliana López-Kleine,
Dolly Montoya Castaño, and Diego Mauricio Riaño-Pachón.
Draft genome sequences of clostridium strains native to colombia with
the potential to produce solvents.
<em>Genome Announc</em>, 3(3), 2015.
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<a href="http://dx.doi.org/10.1128/genomeA.00486-15">DOI</a> |
<a href="http://dx.doi.org/10.1128/genomeA.00486-15">http</a> ]
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<tr valign="top">
<td align="right" class="bibtexnumber">
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<td class="bibtexitem">
Lucia Mattiello, Diego Mauricio Riaño-Pachón, Marina Camara Mattos
Martins, Larissa Prado da Cruz, Denis Bassi, Paulo Eduardo Ribeiro
Marchiori, Rafael Vasconcelos Ribeiro, Mônica T Veneziano Labate,
Carlos Alberto Labate, and Marcelo Menossi.
Physiological and transcriptional analyses of developmental stages
along sugarcane leaf.
<em>BMC Plant Biol</em>, 15:300, 2015.
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<a href="http://dx.doi.org/10.1186/s12870-015-0694-z">DOI</a> |
<a href="http://dx.doi.org/10.1186/s12870-015-0694-z">http</a> ]
</td>
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<tr valign="top">
<td align="right" class="bibtexnumber">
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</td>
<td class="bibtexitem">
Marçal Mariné, Neil Andrew Brown, Diego Mauricio
Riaño-Pachón, and Gustavo Henrique Goldman.
On and under the skin: Emerging basidiomycetous yeast infections
caused by trichosporon species.
<em>PLoS Pathog</em>, 11(7):e1004982, Jul 2015.
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<a href="http://dx.doi.org/10.1371/journal.ppat.1004982">DOI</a> |
<a href="http://dx.doi.org/10.1371/journal.ppat.1004982">http</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
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<td class="bibtexitem">
Fernanda Mandelli, Brenda Oliveira Ramires, Matthew Brian Couger, Douglas
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Riaño-Pachón, and Fabio M. Squina.
Draft genome sequence of the thermophile thermus filiformis atcc
43280, producer of carotenoid-(di)glucoside-branched fatty acid (di)esters
and source of hyperthermostable enzymes of biotechnological interest.
<em>Genome Announc</em>, 3(3), 2015.
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<a href="http://dx.doi.org/10.1128/genomeA.00475-15">DOI</a> |
<a href="http://dx.doi.org/10.1128/genomeA.00475-15">http</a> ]
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<tr valign="top">
<td align="right" class="bibtexnumber">
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<td class="bibtexitem">
Renato Augusto Corrêa Dos Santos, Andresa Aparecida Berretta, Hernane
da Silva Barud, Sidney José Lima Ribeiro, Laura Natalia
González-García, Tiago Domingues Zucchi, Gustavo H. Goldman, and
Diego M. Riaño-Pachón.
Draft genome sequence of komagataeibacter intermedius strain af2, a
producer of cellulose, isolated from kombucha tea.
<em>Genome Announc</em>, 3(6), 2015.
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<a href="http://dx.doi.org/10.1128/genomeA.01404-15">DOI</a> |
<a href="http://dx.doi.org/10.1128/genomeA.01404-15">http</a> ]
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<tr valign="top">
<td align="right" class="bibtexnumber">
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<td class="bibtexitem">
Mohammad Amin Omidbakhshfard, Flavia Vischi Winck, Samuel Arvidsson, Diego M.
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A step-by-step protocol for formaldehyde-assisted isolation of
regulatory elements from arabidopsis thaliana.
<em>J Integr Plant Biol</em>, 56(6):527--538, Jun 2014.
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<a href="http://dx.doi.org/10.1111/jipb.12151">DOI</a> |
<a href="http://dx.doi.org/10.1111/jipb.12151">http</a> ]
</td>
</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
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<td class="bibtexitem">
Juliana Velasco de Castro Oliveira, Thuanny A. Borges, Renato Augusto
Corrêa dos Santos, Larissa F D. Freitas, Carlos Augusto Rosa,
Gustavo Henrique Goldman, and Diego Mauricio Riaño-Pachón.
Pseudozyma brasiliensis sp. nov., a xylanolytic, ustilaginomycetous
yeast species isolated from an insect pest of sugarcane roots.
<em>Int J Syst Evol Microbiol</em>, 64(Pt 6):2159--2168, Jun 2014.
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<a href="http://dx.doi.org/10.1099/ijs.0.060103-0">DOI</a> |
<a href="http://dx.doi.org/10.1099/ijs.0.060103-0">http</a> ]
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<tr valign="top">
<td align="right" class="bibtexnumber">
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<td class="bibtexitem">
Renato Augusto Corrêa Dos Santos, Andresa A. Berretta, Hernane da Silva
Barud, Sidney José Lima Ribeiro, Laura Natalia
González-García, Tiago Domingues Zucchi, Gustavo H. Goldman, and
Diego M. Riaño-Pachón.
Draft genome sequence of komagataeibacter rhaeticus strain af1, a
high producer of cellulose, isolated from kombucha tea.
<em>Genome Announc</em>, 2(4), 2014.
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<a href="http://dx.doi.org/10.1128/genomeA.00731-14">DOI</a> |
<a href="http://dx.doi.org/10.1128/genomeA.00731-14">http</a> ]
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<tr valign="top">
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Marco A. Cristancho, David Octavio Botero-Rozo, William Giraldo, Javier Tabima,
Diego Mauricio Riaño-Pachón, Carolina Escobar, Yomara Rozo,
Luis F. Rivera, Andrés Durán, Silvia Restrepo, Tamar Eilam,
Yehoshua Anikster, and Alvaro L. Gaitán.
Annotation of a hybrid partial genome of the coffee rust (hemileia
vastatrix) contributes to the gene repertoire catalog of the pucciniales.
<em>Front Plant Sci</em>, 5:594, 2014.
[ <a href="dmrpPublications_bib.html#Cristancho2014">bib</a> |
<a href="http://dx.doi.org/10.3389/fpls.2014.00594">DOI</a> |
<a href="http://dx.doi.org/10.3389/fpls.2014.00594">http</a> ]
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<tr valign="top">
<td align="right" class="bibtexnumber">
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<td class="bibtexitem">
Francisco Javier Buitrago-Flórez, Silvia Restrepo, and Diego Mauricio
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Identification of transcription factor genes and their correlation
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<em>PLoS One</em>, 9(11):e111841, 2014.
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<a href="http://dx.doi.org/10.1371/journal.pone.0111841">DOI</a> |
<a href="http://dx.doi.org/10.1371/journal.pone.0111841">http</a> ]
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</tr>
<tr valign="top">
<td align="right" class="bibtexnumber">
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<td class="bibtexitem">
Flavia Vischi Winck, Flavia Vischi Winck, Samuel Arvidsson, Diego Mauricio
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David Alejandro Urbina Gomez, Jens Rupprecht, and Bernd Mueller-Roeber.
Genome-wide identification of regulatory elements and reconstruction
of gene regulatory networks of the green alga chlamydomonas reinhardtii under
carbon deprivation.
<em>PLoS One</em>, 8(11):e79909, 2013.
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<a href="http://dx.doi.org/10.1371/journal.pone.0079909">DOI</a> |
<a href="http://dx.doi.org/10.1371/journal.pone.0079909">http</a> ]
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<tr valign="top">
<td align="right" class="bibtexnumber">
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<td class="bibtexitem">
Betsy A. Read, Jessica Kegel, Mary J. Klute, Alan Kuo, Stephane C. Lefebvre,
Florian Maumus, Christoph Mayer, John Miller, Adam Monier, Asaf Salamov,
Jeremy Young, Maria Aguilar, Jean-Michel Claverie, Stephan Frickenhaus,
Karina Gonzalez, Emily K. Herman, Yao-Cheng Lin, Johnathan Napier, Hiroyuki
Ogata, Analissa F. Sarno, Jeremy Shmutz, Declan Schroeder, Colomban de
Vargas, Frederic Verret, Peter von Dassow, Klaus Valentin, Yves Van de
Peer, Glen Wheeler, Emiliania huxleyi Annotation Consortium , Joel B.
Dacks, Charles F. Delwiche, Sonya T. Dyhrman, Gernot Glöckner, Uwe
John, Thomas Richards, Alexandra Z. Worden, Xiaoyu Zhang, and Igor V.
Grigoriev.
Pan genome of the phytoplankton emiliania underpins its global
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<em>Nature</em>, 499(7457):209--213, Jul 2013.
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<a href="http://dx.doi.org/10.1038/nature12221">DOI</a> |
<a href="http://dx.doi.org/10.1038/nature12221">http</a> ]
</td>
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<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="Oliveira2013">39</a>]
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<td class="bibtexitem">
Juliana Velasco de Castro Oliveira, Renato Augusto Corrêa Dos Santos,
Thuanny A. Borges, Diego Mauricio Riaño-Pachón, and
Gustavo Henrique Goldman.
Draft genome sequence of pseudozyma brasiliensis sp. nov. strain
ghg001, a high producer of endo-1,4-xylanase isolated from an insect pest of
sugarcane.
<em>Genome Announc</em>, 1(6), 2013.
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<a href="http://dx.doi.org/10.1128/genomeA.00920-13">DOI</a> |
<a href="http://dx.doi.org/10.1128/genomeA.00920-13">http</a> ]
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<tr valign="top">
<td align="right" class="bibtexnumber">
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<td class="bibtexitem">
Liliana López-Kleine, Andrés Pinzón, Diego Chaves, Silvia
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Chromosome 10 in the tomato plant carries clusters of genes
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<em>Genomics</em>, 101(4):249--255, Apr 2013.
[ <a href="dmrpPublications_bib.html#Lopez-Kleine2013">bib</a> |
<a href="http://dx.doi.org/10.1016/j.ygeno.2013.02.001">DOI</a> |
<a href="http://dx.doi.org/10.1016/j.ygeno.2013.02.001">http</a> ]
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<tr valign="top">
<td align="right" class="bibtexnumber">
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<td class="bibtexitem">
Flavia V. Winck, Diego M. Riaño-Pachón, Frederik Sommer, Jens
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The nuclear proteome of the green alga chlamydomonas reinhardtii.
<em>Proteomics</em>, 12(1):95--100, Jan 2012.
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<a href="http://dx.doi.org/10.1002/pmic.201000782">DOI</a> |
<a href="http://dx.doi.org/10.1002/pmic.201000782">http</a> ]
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<tr valign="top">
<td align="right" class="bibtexnumber">
[<a name="Gomez-Porras2012">42</a>]
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<td class="bibtexitem">
Judith Lucia Gomez-Porras, Diego Mauricio Riaño-Pachón,
Begoña Benito, Rosario Haro, Kamil Sklodowski, Alonso
Rodríguez-Navarro, and Ingo Dreyer.
Phylogenetic analysis of k(+) transporters in bryophytes, lycophytes,
and flowering plants indicates a specialization of vascular plants.
<em>Front Plant Sci</em>, 3:167, 2012.
[ <a href="dmrpPublications_bib.html#Gomez-Porras2012">bib</a> |
<a href="http://dx.doi.org/10.3389/fpls.2012.00167">DOI</a> |
<a href="http://dx.doi.org/10.3389/fpls.2012.00167">http</a> ]
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<tr valign="top">
<td align="right" class="bibtexnumber">
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<td class="bibtexitem">
Ingo Dreyer, Judith Lucia Gomez-Porras, Diego Mauricio
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Molecular evolution of slow and quick anion channels (slacs and
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Cédric Finet, Sandra K. Floyd, Wolf B. Frommer, Tomomichi Fujita, Lydia
Gramzow, Michael Gutensohn, Jesper Harholt, Mitsuru Hattori, Alexander Heyl,
Tadayoshi Hirai, Yuji Hiwatashi, Masaki Ishikawa, Mineko Iwata, Kenneth G.
Karol, Barbara Koehler, Uener Kolukisaoglu, Minoru Kubo, Tetsuya Kurata,
Sylvie Lalonde, Kejie Li, Ying Li, Amy Litt, Eric Lyons, Gerard Manning,
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Morinaga, Takashi Murata, Bernd Mueller-Roeber, David R. Nelson, Mari Obara,
Yasuko Oguri, Richard G. Olmstead, Naoko Onodera, Bent Larsen Petersen,
Birgit Pils, Michael Prigge, Stefan A. Rensing, Diego Mauricio
Riaño-Pachón, Alison W. Roberts, Yoshikatsu Sato, Henrik Vibe
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Sotooka, Nagisa Sugimoto, Mamoru Sugita, Naomi Sumikawa, Milos Tanurdzic,
Günter Theissen, Peter Ulvskov, Sachiko Wakazuki, Jing-Ke Weng, William
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Qihui Zhu, Therese Mitros, Uffe Hellsten, Dominique Loqué, Robert
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The selaginella genome identifies genetic changes associated with the
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Johannes Rohrmann, Takayuki Tohge, Rob Alba, Sonia Osorio, Camila Caldana, Ryan
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Diego Mauricio Riaño-Pachón, Sabrina Kleessen, Jost Neigenfind,
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