Issues

• VCF-based prediction is unnecessarily slow due to full VCF scan

  czi-ai/variantformer#61 · Filter by author yoshihikosuzuki opened on Apr 7, 2026
  

• Dose the variantformer support predicting the gene expression caused by the indel?

  czi-ai/variantformer#57 · Filter by author Project4bz2023 opened on Nov 27, 2025
  1

• Add .github/CODEOWNERS

  Feature

  czi-ai/variantformer#50 · Filter by author barhomi opened on Nov 5, 2025

• Restructure the package (PEP 621)

  P0
  Feature

  czi-ai/variantformer#44 · Filter by author barhomi opened on Nov 4, 2025

• check new licenses for marimo if they fit under MIT

  P0
  czi-ai/variantformer#38 · Filter by author barhomi opened on Nov 1, 2025

• Go through all the open source guidance list from czi

  P0
  Task

  czi-ai/variantformer#30 · Filter by author barhomi opened on Oct 31, 2025
  

• Define ARTEFACTS_DIR in the __init__.py at package source

  Feature

  czi-ai/variantformer#28 · Filter by author barhomi opened on Oct 31, 2025

• Create pypi package

  czi-ai/variantformer#23 · Filter by author sayangsep opened on Oct 31, 2025
  1

• Remove all the relative paths constructions

  P0
  Feature

  czi-ai/variantformer#15 · Filter by author barhomi opened on Oct 30, 2025
  

• Introduce pandas to read from parquet in BaseManivestLookup

  czi-ai/variantformer#14 · Filter by author barhomi opened on Oct 30, 2025