From 4b9b77a88f0f0d1af42226676c2d3dec814150bb Mon Sep 17 00:00:00 2001
From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com>
Date: Wed, 25 Feb 2026 05:03:19 +0000
Subject: [PATCH 1/4] Initial plan


From 670e77214d6e25d315789edff18676d7a1efa367 Mon Sep 17 00:00:00 2001
From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com>
Date: Wed, 25 Feb 2026 05:04:28 +0000
Subject: [PATCH 2/4] Add R-CMD-check CI workflow

Co-authored-by: asgr <5617132+asgr@users.noreply.github.com>
---
 .github/workflows/main.yml | 52 ++++++++++++++++++++++++++++++++++++++
 1 file changed, 52 insertions(+)
 create mode 100644 .github/workflows/main.yml

diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
new file mode 100644
index 0000000..7131fbe
--- /dev/null
+++ b/.github/workflows/main.yml
@@ -0,0 +1,52 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+  pull_request:
+    branches: [main, master]
+
+name: R-CMD-check
+
+permissions:
+  contents: read
+
+jobs:
+  R-CMD-check:
+    runs-on: ${{ matrix.config.os }}
+
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          - {os: macOS-latest,    r: 'release'}
+          - {os: windows-latest,  r: 'release'}
+          - {os: ubuntu-latest,   r: 'devel', http-user-agent: 'release'}
+          - {os: ubuntu-latest,   r: 'release'}
+          - {os: ubuntu-latest,   r: 'oldrel-1'}
+
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
+
+    steps:
+      - uses: actions/checkout@v2
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: ${{ matrix.config.r }}
+          http-user-agent: ${{ matrix.config.http-user-agent }}
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::rcmdcheck
+
+      - uses: r-lib/actions/check-r-package@v2
+        with:
+          args: 'c("--no-manual", "--as-cran")'
+          error-on: '"error"'
+          upload-snapshots: true

From 38efe3b429e7e2e8a7237f84317d9c296008689b Mon Sep 17 00:00:00 2001
From: Aaron Robotham <aaron.robotham@uwa.edu.au>
Date: Wed, 25 Feb 2026 13:54:59 +0800
Subject: [PATCH 3/4] Update R dependencies in GitHub Actions workflow

---
 .github/workflows/main.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
index 7131fbe..667a680 100644
--- a/.github/workflows/main.yml
+++ b/.github/workflows/main.yml
@@ -43,7 +43,7 @@ jobs:
 
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
-          extra-packages: any::rcmdcheck
+          extra-packages: github::asgr/ProSpect@master, any::rcmdcheck
 
       - uses: r-lib/actions/check-r-package@v2
         with:

From 13a41eb2eafbcb1f589ec78e58edbf9fe35d5e81 Mon Sep 17 00:00:00 2001
From: "copilot-swe-agent[bot]" <198982749+Copilot@users.noreply.github.com>
Date: Wed, 25 Feb 2026 06:02:24 +0000
Subject: [PATCH 4/4] Fix CI: use dependencies hard to skip Suggests and avoid
 unresolvable ProSpect transitive deps

Co-authored-by: asgr <5617132+asgr@users.noreply.github.com>
---
 .github/workflows/main.yml | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
index 667a680..1b75bdd 100644
--- a/.github/workflows/main.yml
+++ b/.github/workflows/main.yml
@@ -43,7 +43,8 @@ jobs:
 
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
-          extra-packages: github::asgr/ProSpect@master, any::rcmdcheck
+          dependencies: '"hard"'
+          extra-packages: any::rcmdcheck
 
       - uses: r-lib/actions/check-r-package@v2
         with: