-
Notifications
You must be signed in to change notification settings - Fork 2
Expand file tree
/
Copy pathvalidate.py
More file actions
262 lines (198 loc) · 7.41 KB
/
Copy pathvalidate.py
File metadata and controls
262 lines (198 loc) · 7.41 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
import os
import re
import gc
import pdb
import torch
import pickle
import random
import argparse
import datetime
import numpy as np
import torch.nn as nn
import torch.nn.functional as F
import torch.distributed as dist
import torch.multiprocessing as mp
import torchvision.transforms as transforms
from PIL import Image
from glob import glob
from tqdm import tqdm
from pathlib import Path
from collections import OrderedDict
from matplotlib import pyplot as plt
from torch.nn.parallel import DataParallel
from torch.utils.data import Dataset, DataLoader
from scipy.optimize import linear_sum_assignment
from torchvision.ops import complete_box_iou_loss
from torchvision.models import resnet50, ResNet50_Weights
from torch.nn.parallel import DistributedDataParallel as DDP
from sklearn.metrics import precision_recall_curve, average_precision_score, f1_score
from pretrain import *
from model.transformer import *
from utils.plots import plot_images
from utils.dataloader import create_dataloader
from loss.matching_loss import build_matcher
from utils.util import plot_attention, pltbbox, id_per_file, read_data
from utils.general import xywh2xyxy, xyxy2xywh
from loss.loss_criterion import *
# from train import get_loader, get_dataset pltbbox(m.cpu(),p[:,
from loss.matching_loss import box_cxcywh_to_xyxy, box_iou
from eval.metrics import MetricLogger, SmoothedValue, accuracy
from eval.metrices import *
from eval.eval import EvaluationCriterion
torch.manual_seed(1213)
np.random.seed(2022)
random.seed(1027)
import wandb
wb=False
TQDM_BAR_FORMAT = '{desc} {n_fmt}/{total_fmt} [{elapsed} | {remaining} | {rate_fmt}]'
def compute_loss(outputs, targets, criterion):
loss_dict = criterion(outputs, targets) #.to(outputs.device)
weight_dict = criterion.weight_dict
losses = sum(loss_dict[k] * weight_dict[k] for k in loss_dict.keys() if k in weight_dict)
loss_reduced = reduce_dict(loss_dict)
return losses, loss_reduced
def epoch_validate(rank, model, val_loader, criterion, nc, plot=True, wb=False):
# torch.cuda.empty_cache()
# gc.collect()
criterion.eval()
# model.eval()
# postprocessors = {'bbox': PostProcess()}
if rank==0:
print(('\n' + '%44s'+'%22s' * 4) % ('***Validation***', 'bbox_loss', 'ce_loss', 'giou_loss', 'total_loss'))
pbar = tqdm(enumerate(val_loader), total=len(val_loader), bar_format=TQDM_BAR_FORMAT)
eval_criterion = EvaluationCriterion(rank, plot=plot)
lossess = []
for batch_idx, (images, targets, fn) in pbar:
images = images.to(rank)
targets = [t.to(rank, non_blocking=True) for t in targets]
with torch.no_grad():
# Forward pass
outputs = model(images.permute(1,0,2,3,4))
outputs = {'pred_logits':outputs[0], 'pred_boxes': outputs[1]}
target = [{'labels': t[:,0], 'boxes':t[:,1:]} for t in targets]
loss, batch_loss = compute_loss(outputs, target, criterion)
if wb:
wandb.log({'val_loss': loss})
wandb.log({'val_'+a:b for a,b in batch_loss.items()})
# plot_attention(images[1].detach().cpu(), atn.permute(0,2,1).detach().cpu(), fn)
lossess.append(loss.item())
# results = postprocessors['bbox'](outputs, images.shape[-2:])
# res = {batch_idx: [output for output in results]}
if rank==0:
pbar.set_description(('%44s'+'%22.4g' * 4) % (f' ',
batch_loss['loss_bbox'].item(),
batch_loss['loss_ce'].item(),
batch_loss['loss_giou'].item(),
loss.item()))
eval_criterion.evalcriterion(batch_idx, images[:,1], targets, outputs, fn, save_dir='valimages/')
# if batch_idx>2:
# break
loss=sum(lossess)/len(lossess)
fitness = eval_criterion.calcmetric(plot=plot, save_dir='valimages/', loss=loss)
return fitness, loss
def setup(rank, world_size):
# Initialize the process group
dist.init_process_group(
backend="nccl",
init_method="tcp://127.0.0.1:12426",
rank=rank,
world_size=world_size,
timeout=datetime.timedelta(seconds=5)
)
# Set the GPU to use
torch.cuda.set_device(rank)
def cleanup():
dist.destroy_process_group()
def get_loader(dataset, batch_size):
sampler = DistributedSampler(dataset, shuffle=True)
data_loader = DataLoader(dataset,
batch_size=batch_size,
shuffle=False,
num_workers=6,
sampler=sampler,
drop_last=False,
collate_fn=dataset.collate_fn)
return data_loader
def load_saved_model(weights_path, root, M, O=None):
ckptfile = root + 'runs/' + weights_path + '.pth'
ckpts = torch.load(ckptfile, map_location='cpu')
ckpt = ckpts['model_state_dict']
if O is None:
new_state_dict = OrderedDict()
for key, value in ckpt.items():
new_key = key.replace('module.encoder.', '')
new_state_dict[new_key] = value
M.load_state_dict(new_state_dict)
if O is not None:
M.load_state_dict(ckpt)
O.load_state_dict(ckpts['optimizer_state_dict'])
start_epoch = ckpts['epoch']+1
best_accuracy = ckpts['best_fitness']
return M, O, start_epoch, best_accuracy
return M
def validate(rank, world_size, opt):
setup(rank, world_size)
batch_size = opt.batch
nc = opt.nc
r = opt.r
space = opt.space
dataroot = opt.dataroot
root = opt.root
weights = opt.weights
data = read_data('val')
val_dataset = create_dataloader(data,
dataroot,
batch_size,
rank=rank,
cache='ram', # if opt.cache == 'val' else opt.cache,
workers=6,
phase='val',
shuffle=True,
r=r,
space=space)
# get_dataset(rank, world_size, dataroot, 'val2', batch_size, r, space)
# define detection model
encoder = Encoder(hidden_dim=256,num_encoder_layers=6, nheads=8).to(rank)
encoder = load_saved_model('0best_pretrainer', root, encoder, None)
model = Dent_Pt(encoder, hidden_dim=256, num_class=2).to(rank)
model = DDP(model, device_ids=[rank], find_unused_parameters=True)
val_loader = get_loader(val_dataset, batch_size)
if wb:
wandb.init(
project="scr",
name="test",
config={
"architecture": "DENT",
"dataset": "SCR",
"steps": len(val_loader),
"batch":32,
"num_classes": 2,
"class_names": ['Fovea, SCR']
})
ckptfile = root + weights + '.pth'
ckpts = torch.load(ckptfile)
model.load_state_dict(ckpts['model_state_dict'])
# model = torch.load(ckptfile)
# best_accuracy = ckpts['best_fitness']
criterion_val,_ = loss_functions(nc, phase='val')
# rank = torch.device('cuda:0' if torch.cuda.is_available() else 'cpu')
epoch_validate(rank, model, val_loader, criterion_val, nc, wb=wb)
if wb:
wandb.finish()
cleanup()
def arg_parse():
parser = argparse.ArgumentParser()
parser.add_argument('--root', type=str, default='/media/jakep/eye/scr/dent/', help='project root path')
parser.add_argument('--dataroot', type=str, default='/media/jakep/eye/scr/dent/data', help='path to pickled dataset')
parser.add_argument('--world_size', type=int, default=1, help='World size')
parser.add_argument('--weights', type=str, default='outputs/detection_best', help='path to trained weights')
parser.add_argument('--nc', type=int, default=2, help='number of classes')
parser.add_argument('--r', type=int, default=3, help='number of adjacent images to stack')
parser.add_argument('--space', type=int, default=1, help='Number of steps/ stride for next adjacent image block')
parser.add_argument('--batch', type=int, default=32, help='validation batch size')
return parser.parse_args()
if __name__ == '__main__':
if wb:
wandb.login()
opt = arg_parse()
mp.spawn(validate, args=(opt.world_size, opt), nprocs=opt.world_size, join=True)