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goedmangoedman
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Rel 0.1.2
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‎.vscode/settings.json‎

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{
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"julia.environmentPath": "/Users/rob/.julia/environments/v1.6"
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}

‎Project.toml‎

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name = "StructuralCausalModels"
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uuid = "a41e6734-49ce-4065-8b83-aff084c01dfd"
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authors = ["Rob J Goedman <goedman@mac.com>"]
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version = "0.1.1"
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version = "0.1.2"
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[deps]
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CSV = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b"

‎SCM.code-workspace‎

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{
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"folders": [
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{
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"path": "."
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}
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],
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"settings": {
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"julia.environmentPath": "/Users/rob/.julia/environments/v1.6"
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}
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}

‎conf_triangles.dot‎

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digraph conf_triangles {
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B -> Z;
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B -> D;
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A -> Z;
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A -> E;
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Z -> E;
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Z -> D;
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E -> D;
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}

‎examples/Shipley/fig2.6/fig2.6.jl‎

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ProjDir = @__DIR__
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cd(ProjDir) #do
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VERSION
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fname = scm_path("..", "examples", "Shipley", "fig2.6", "fig2.6.dot")
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Sys.isapple() && run(`open -a GraphViz.app $(fname)`)
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);
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dag = DAG("fig2.6", d);
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show(dag)
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f = [:x]; s = [:v]
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g1 = d_separation(dag, f, s)

‎notebooks/confounding_triangles.ipynb‎

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‎notebooks/pluto_notebook.jl‎

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### A Pluto.jl notebook ###
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# v0.11.2
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using Markdown
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using InteractiveUtils
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# ╔═╡ 7079ec54-d3f6-11ea-0034-79a1c1c5b137
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md"# The Basel problem
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_Leonard Euler_ proved in 1741 that the series
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$$\frac{1}{1} + \frac{1}{4} + \frac{1}{9} + \cdots$$
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converges to
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$$\frac{\pi^2}{6}$$"
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# ╔═╡ cce045ac-d373-11ea-29af-5be52ed80e36
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md"## Test Pluto notebook"
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# ╔═╡ 30cfc76c-d276-11ea-1e1a-6567e0173d69
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using DrWatson
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# ╔═╡ cfa1909e-d278-11ea-215d-4f34edbb8294
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using StructuralCausalModels
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# ╔═╡ a1b39506-d278-11ea-1a13-05f75d56dbca
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VERSION
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# ╔═╡ dde39c20-d272-11ea-00b1-71e8b3c09e79
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cd(joinpath(homedir(), ".julia/dev/StructuralCausalModels"))
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# ╔═╡ 3ed7655e-d276-11ea-185b-29e9192ba4f0
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@quickactivate "StructuralCausalModels"
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# ╔═╡ 742ca656-d276-11ea-04ab-f36281c92836
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d_string = "dag {A -> {E Z}; B -> {D Z}; Z -> {D E}; E -> D}";
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# ╔═╡ 739fdd34-d276-11ea-0632-13aeca3d3aa5
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dag = DAG("conf_triangles", d_string);
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# ╔═╡ 98ce6cf6-d276-11ea-15d5-856fba9a3c50
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dag.a
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# ╔═╡ 182e0140-d374-11ea-254b-8f4a175f4f06
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dag.d
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# ╔═╡ eb94dbbc-d278-11ea-2f78-9bd8a49d14d9
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fname = projectdir() * "/conf_triangles.dot";
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# ╔═╡ eafca4d2-d278-11ea-08ce-11367ae96f69
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to_graphviz(dag, fname);
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# ╔═╡ 59229f0e-d277-11ea-0bc8-cb68e38ae3b3
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Sys.isapple() && run(`open -a GraphViz.app $(fname)`);
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# ╔═╡ 1223d8ee-d279-11ea-2ba4-7dbae68007ff
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to_ggm(dag)
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# ╔═╡ 11b28448-d279-11ea-1d52-2544424ea533
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bs = basis_set(dag)
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# ╔═╡ 8fd4685c-d374-11ea-3b9c-670bb9da8a7c
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bs.bs
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# ╔═╡ 2b60ff06-d2cd-11ea-0bf6-050ad1720b31
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f = :A
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# ╔═╡ 4dc673b4-d2cd-11ea-1ca4-219bfa2bf57d
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d = :B
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# ╔═╡ 582b9c98-d279-11ea-2daf-93e7a13c9966
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d_separation(dag, f, :B)
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# ╔═╡ 57534fc8-d279-11ea-0b9b-a99db30bc7b4
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d_separation(dag, d, :E)
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# ╔═╡ 5712eff0-d279-11ea-3978-2106eb0feb76
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d_separation(dag, d, :E; c=[:A, :Z])
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# ╔═╡ Cell order:
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# ╠═7079ec54-d3f6-11ea-0034-79a1c1c5b137
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# ╠═cce045ac-d373-11ea-29af-5be52ed80e36
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# ╠═a1b39506-d278-11ea-1a13-05f75d56dbca
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# ╠═dde39c20-d272-11ea-00b1-71e8b3c09e79
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# ╠═30cfc76c-d276-11ea-1e1a-6567e0173d69
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# ╠═3ed7655e-d276-11ea-185b-29e9192ba4f0
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# ╠═742ca656-d276-11ea-04ab-f36281c92836
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# ╠═cfa1909e-d278-11ea-215d-4f34edbb8294
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# ╠═739fdd34-d276-11ea-0632-13aeca3d3aa5
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# ╠═98ce6cf6-d276-11ea-15d5-856fba9a3c50
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# ╠═182e0140-d374-11ea-254b-8f4a175f4f06
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# ╠═eb94dbbc-d278-11ea-2f78-9bd8a49d14d9
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# ╠═eafca4d2-d278-11ea-08ce-11367ae96f69
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# ╠═59229f0e-d277-11ea-0bc8-cb68e38ae3b3
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# ╠═1223d8ee-d279-11ea-2ba4-7dbae68007ff
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# ╠═11b28448-d279-11ea-1d52-2544424ea533
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# ╠═8fd4685c-d374-11ea-3b9c-670bb9da8a7c
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# ╠═2b60ff06-d2cd-11ea-0bf6-050ad1720b31
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# ╠═4dc673b4-d2cd-11ea-1ca4-219bfa2bf57d
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# ╠═582b9c98-d279-11ea-2daf-93e7a13c9966
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# ╠═57534fc8-d279-11ea-0b9b-a99db30bc7b4
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# ╠═5712eff0-d279-11ea-3978-2106eb0feb76

‎research/ancestral.dot‎

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digraph ancestral
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{
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"v" -> "u";
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"v" -> "w";
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"u" -> "s1" [dir=both];
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"x" -> "u" [dir=none, color=red];
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"y" -> "w";
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"w" -> "s2";
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}

‎research/ancestral_dor.png‎

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‎test/test_basis_set_01.jl‎

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bs = basis_set(dag)
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@testset "basis_set_01" begin
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@test length(bs) == 48

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