Rel 1.5.3 - Pkg & cmdstan updates

Author: goedman

.github/workflows/CI.yml

@@ -7,7 +7,7 @@ on:
   pull_request:
 
 env:
-  JULIA_CMDSTAN_HOME: "/home/worker/cmdstan-2.31.0/"
+  JULIA_CMDSTAN_HOME: "/home/worker/cmdstan-2.33.1/"
 
 jobs:
   test:
@@ -17,7 +17,7 @@ jobs:
       matrix:
         version:
           - '1'
-          - nightly
+          #- nightly
         os:
           - ubuntu-latest
           #- macOS-latest
@@ -41,18 +41,18 @@ jobs:
           OLDWD=`pwd`
           cd ~
           pwd
-          wget https://github.com/stan-dev/cmdstan/releases/download/v2.31.0/cmdstan-2.31.0.tar.gz
-          tar -xzpf cmdstan-2.31.0.tar.gz
+          wget https://github.com/stan-dev/cmdstan/releases/download/v2.33.1/cmdstan-2.33.1.tar.gz
+          tar -xzpf cmdstan-2.33.1.tar.gz
           ls -lia .
-          ls -lia ./cmdstan-2.31.0
-          ls -lia ./cmdstan-2.31.0/make
-          touch ./cmdstan-2.31.0/make/local
-          echo "STAN_THREADS=true" > ./cmdstan-2.31.0/make/local
-          cat ./cmdstan-2.31.0/make/local
+          ls -lia ./cmdstan-2.33.1
+          ls -lia ./cmdstan-2.33.1/make
+          touch ./cmdstan-2.33.1/make/local
+          echo "STAN_THREADS=true" > ./cmdstan-2.33.1/make/local
+          cat ./cmdstan-2.33.1/make/local
           make -C $JULIA_CMDSTAN_HOME build
           cd $OLDWD
         env:
-          JULIA_CMDSTAN_HOME: "/home/runner/cmdstan-2.31.0/"
+          JULIA_CMDSTAN_HOME: "/home/runner/cmdstan-2.33.1/"
       - uses: actions/checkout@v2
       - uses: julia-actions/setup-julia@v1
         with:
@@ -71,7 +71,7 @@ jobs:
       - uses: julia-actions/julia-buildpkg@latest
       - uses: julia-actions/julia-runtest@latest
         env:
-          JULIA_CMDSTAN_HOME: "/home/runner/cmdstan-2.31.0/"
+          JULIA_CMDSTAN_HOME: "/home/runner/cmdstan-2.33.1/"
       - uses: julia-actions/julia-processcoverage@v1
         if: matrix.version == '1' && matrix.os == 'ubuntu-latest' && matrix.num_threads == 1
       - uses: codecov/codecov-action@v1

Project.toml

@@ -1,7 +1,7 @@
 name = "ParetoSmoothedImportanceSampling"
 uuid = "98f080ec-61e2-11eb-1c7b-31ea1097256f"
 authors = ["@alvaro1101, Rob J Goedman <goedman@icloud.com>"]
-version = "1.5.2"
+version = "1.5.3"
 
 [deps]
 CSV = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b"

src/gpdfitnew.jl

@@ -2,7 +2,7 @@
 """
     gpdfitnew(x)
 
-Estimate the paramaters for the Generalized Pareto Distribution (GPD). Returns empirical Bayes estimate for the parameters of the two-parameter generalized Parato distribution given the data.
+Estimate the parameters for the Generalized Pareto Distribution (GPD). Returns empirical Bayes estimate for the parameters of the two-parameter generalized Parato distribution given the data.
 
 # Arguments
 * `x::AbstractArray`: One dimensional data array.

test/arsenic_logistic.stan

@@ -1,7 +1,7 @@
 data {
   int<lower=0> p;
   int<lower=0> N;
-  int<lower=0,upper=1> y[N];
+  array[N] int<lower=0,upper=1> y;
   matrix[N,p] x;
 }
 

test/arsenic_logistic_t.stan

@@ -1,10 +1,10 @@
 data {
   int<lower=0> p;
   int<lower=0> N;
-  int<lower=0,upper=1> y[N];
+  array[N] int<lower=0,upper=1> y;
   matrix[N,p] x;
   int<lower=0> Nt;
-  int<lower=0,upper=1> yt[Nt];
+  array[Nt] int<lower=0,upper=1> yt;
   matrix[Nt,p] xt;
 }
 transformed data {