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Fix berry restore keeping removed descriptors (#1435) #4258

Job	Run time
clippy	-1s
e2e-build-windows	-1s
yarn-berry ${{ matrix.yarn }} (${{ matrix.os }})	-1s
yarn-berry ${{ matrix.yarn }} (${{ matrix.os }})	-1s
docker-base	-1s
node-addon	-1s
ci-ok	6s
cargo ${{ matrix.toolchain }} lock-v${{ (matrix.lock \|\| 'own') }} (${{ matrix.os }})	-1s
cargo ${{ matrix.toolchain }} lock-v${{ (matrix.lock \|\| 'own') }} (${{ matrix.os }})	-1s
e2e-docker	0s
e2e-windows	-1s
e2e-macos	-1s
coverage-docker	0s
cargo ${{ matrix.toolchain }} lock-v${{ (matrix.lock \|\| 'own') }} (${{ matrix.os }})	0s
cargo ${{ matrix.toolchain }} lock-v${{ (matrix.lock \|\| 'own') }} (${{ matrix.os }})	0s
e2e-full	0s
e2e	0s
e2e-extended	0s
coverage-merge	0s
lint-ecosystems	-7s
yarn-classic ${{ matrix.release }}	-7s
test-release	-7s
windows-compile-check	-7s
dispatch-tests	-7s
e2e-build-macos	-8s
e2e-build	-8s
coverage	-9s
hosted-e2e	-9s
cargo old toolchains (manifest [patch])	-9s
release-readiness	-9s
yarn-berry ${{ matrix.yarn }} (${{ matrix.os }})	-9s
test	-11s
	-111s