diff --git a/.dockerignore b/.dockerignore index 77135c9..0ecb910 100644 --- a/.dockerignore +++ b/.dockerignore @@ -1,7 +1,9 @@ +.git node_modules # testing testdata +test/* # generated zips files/* \ No newline at end of file diff --git a/CI/ILL/.gitlab-ci.yml b/CI/ILL/.gitlab-ci.yml new file mode 100644 index 0000000..42bba18 --- /dev/null +++ b/CI/ILL/.gitlab-ci.yml @@ -0,0 +1,18 @@ +variables: + DOCKER_REGISTRY: docker.ill.fr + +stages: + - build-image + +build-image: + stage: build-image + tags: + - shell + script: + - docker login -u $CI_REGISTRY_USER -p $CI_REGISTRY_PASSWORD $CI_REGISTRY + - docker build -t ${DOCKER_REGISTRY}/${CI_PROJECT_PATH}:${CI_COMMIT_TAG:-$CI_COMMIT_BRANCH} . + - docker push ${DOCKER_REGISTRY}/${CI_PROJECT_PATH}:${CI_COMMIT_TAG:-$CI_COMMIT_BRANCH} + rules: + - if: $CI_COMMIT_BRANCH == $CI_DEFAULT_BRANCH + - if: $CI_COMMIT_BRANCH == "develop" + - if: $CI_COMMIT_TAG =~ /^v.*/ diff --git a/README.md b/README.md index 714c32f..2b7e9a2 100644 --- a/README.md +++ b/README.md @@ -4,11 +4,13 @@ # Description -A service for zipping and downloading a group of files with a common directory on the same machine as the service is running. Authorization is based on the properties username:string groups:string[] in the JWT. +A service for zipping and downloading a group of files, or downloading/streaming a single file, from a directory tree on the same machine as the service is running. Authorization is based on the property `groups:string[]` in the JWT, checked against a SciCat dataset's `accessGroups`/`ownerGroup`/`isPublished` fields. + +The directory containing a dataset's files is not supplied by the client. Instead, it is resolved server-side from `directoryPathPattern` (see [File path resolution](#file-path-resolution)) using values read off the SciCat dataset record, so the caller only ever supplies file names, never directories. # Install -`docker-compose up` or `npm install && npm start` +`npm install && npm start` # Image creation @@ -33,42 +35,89 @@ We hope to automate the image release in the near future. ## main endpoint -The main endpoint will present a default form that can be used to test the download. -The files presented in the form are included in the image available on the repository, and they are available just for testing. -This form is provided for testing and has to be screened and monitored for security purposes. +The main endpoint (`/`) presents links to the zip form (`/zip`) and single-file form (`/file`), which can be used to test downloading. The files presented in these forms are included in the image available on the repository, and they are available just for testing. +These forms are provided for testing and have to be screened and monitored for security purposes. ## zip with download -Zip requests are sent as POST to `/zip`, which redirect to a download progress page. The post body should have the following format: +Zip requests are sent as POST to `/zip`, which redirects to a download progress page. The post body should have the following format: ```json data: { "jwt": "token", - "directory": "/path/to/files", - "files": ["file1","file2","file3"] + "dataset": "", + "files": ["file1", "file2", "file3"] } ``` -/zip shows a page with a progress bar, resulting in a downloadable zip-file. +The directory each file lives in is resolved automatically from `dataset` (see [File path resolution](#file-path-resolution)); the request no longer accepts a `directory` field. `/zip` shows a page with a progress bar, polled from `GET /zip/status`, resulting in a downloadable zip file served from `/download/`. ## zip in place -While [zip with download](zip-with-download) is a two step process (the file is zipped to a temporary directory on the server and then downloaded from the browser), another route, /zip_in_place exists which zips the payload in the same time as downloading. +While [zip with download](#zip-with-download) is a two step process (the file is zipped to a temporary directory on the server and then downloaded from the browser), another route, `/zip_in_place`, exists which zips the payload at the same time as downloading it. It accepts the same POST body as `/zip`. + +## single file access + +`POST /file` requests a link to a single file: + +```json +data: { + "jwt": "token", + "dataset": "", + "fileName": "file1" +} +``` + +On success this returns a short-lived, single-use token that lasts for `fileLinkRetentionMillis` and three URLs built from it: + +| URL | Behavior | +| --- | --- | +| `GET /file/download?token=...` | Downloads the file (`Content-Disposition: attachment`), with byte-range support. | +| `GET /file/stream?token=...` | Streams the file inline (`Content-Disposition: inline`), with byte-range support. | +| `GET /file/open?token=...` | Redirects to `hdfViewServiceUrl`, passing the stream URL so an HDF5/NeXus viewer can render the file. Requires `publicOrigin` to be configured. | + +`HEAD` is also supported on `/file/download` and `/file/stream`. Passing `fileAction: "Download"` or `fileAction: "Open"` in the `POST /file` body redirects directly to the corresponding URL instead of returning JSON. + +# File path resolution + +Rather than trusting a client-supplied directory, the service resolves each file's directory from: + +- `allowedDataDirectory` — the root directory all resolved paths must stay under. +- `directoryPathPattern` — a path template with `{keyword}` placeholders (e.g. `{instrumentIds[0]}`), and at most one `*` wildcard segment matched against the subdirectories of `allowedDataDirectory`. +- `requiredKeywords` — the list of placeholders (matching those used in `directoryPathPattern`) whose values are read off the SciCat dataset record returned for the requested `dataset` (array fields are indexed with `[n]`, e.g. `instrumentIds[0]`). + +Every resolved keyword value is validated to stay within `allowedDataDirectory` and must not contain `..`. + +## Specific facility handling: +- When `facility` is `"ILL"`, keyword values are additionally normalized (e.g. `proposalId` values are prefixed with `exp_`, `type` values starting with `raw` become `rawdata`, `instrumentId` values are lower-cased) to match ILL's on-disk directory naming. -# local.config.json +# config/config.json -Required in the root directory. +Required in the root directory (loaded from `config/config.json`). | property key | Data type | Description | | --------------------- | ----------- | ----------- | -| zipDir | string | directory where generated zip files are stored. Note that zip-files are deleted periodically | -| zipRetentionMillis | number | The number of milliseconds zip files are stored before they're deleted | -| sessionSecret | string | Used to sign session ids to detect client side tampering | -| facility | string | Different facilities have different ways of authorizing file access. This property is used to determine which mechanism to use | -| dramDirectory | string | Upload directory? | -| testData | Object | Optional. Default input values at the index route | -| testData.jwt | string | Optional. Default jwt | -| testData.directory | string | Optional. Default directory | +| routeBasePath | string | Optional. Path prefix the service is mounted under behind a reverse proxy (e.g. `/zip-service`). defaults to `/` | +| publicOrigin | string | The service's own trusted public origin (scheme + host, e.g. `https://zip-service.example.org`).| +| hdfViewServiceUrl | string | Base URL of the HDF5/NeXus view service that `GET /file/open` redirects to. | +| allowedDataDirectory | string | Root directory that all resolved file paths must stay under. | +| directoryPathPattern | string | Path template used to resolve a dataset's file directory. Supports `{keyword}` placeholders and a single `*` wildcard segment. See [File path resolution](#file-path-resolution). | +| zipDir | string | Directory where generated zip files are stored. Note that zip-files are deleted periodically. | +| zipRetentionMillis | number | The number of milliseconds zip files are stored before they're deleted. | +| fileLinkRetentionMillis | number | The number of milliseconds a single-file link/token (from `POST /file`) remains valid. | +| jwtSecret | string | Secret used to sign/verify the JWT clients authenticate with. | +| sessionSecret | string | Used to sign session ids to detect client side tampering. | +| facility | string | Different facilities have different ways of authorizing file access and naming data directories. This property is used to determine which mechanism/normalization to use (e.g. `"ILL"`). | +| requiredKeywords | string[] | Placeholder names (matching `directoryPathPattern`) whose values are read from the SciCat dataset record. | +| scicatApiBasePath | string | Base URL of the SciCat API used to look up dataset access rights. | +| scicatApiAccessToken | string | Access token used to authenticate against the SciCat API. | +| graylogEnabled | boolean | Whether to ship logs to Graylog. | +| graylogServer | string | Graylog server hostname. | +| graylogPort | number | Graylog GELF port. | +| environment | string | Deployment environment name, passed to the logger. | +| testData | Object | Optional. Default input values at the index/zip/file forms. | +| testData.jwt | string | Optional. Default jwt. | | testData.files | string[] | Optional. Default files. | +| dramDirectory | string | Deprecated. Upload directory used by the (currently disabled) `/upload` route. | Example data @@ -76,13 +125,20 @@ Example data { "zipDir": "/tmpZip", "zipRetentionMillis": 3600000, + "fileLinkRetentionMillis": 3600000, "jwtSecret": "secret123", "sessionSecret": "fj9832mnsaf3j9adsa", - "facility": "maxiv", - "dramDirectory": "uploads/", + "facility": "ILL", + "allowedDataDirectory": "/data", + "directoryPathPattern": "/data/{sourceFolder}/{type}", + "requiredKeywords": ["sourceFolder", "type"], + "hdfViewServiceUrl": "https://hdf-viewer.example.org", + "routeBasePath": "", + "publicOrigin": "https://zip-service.example.org", + "scicatApiBasePath": "https://scicat.example.org", + "scicatApiAccessToken": "", "testData": { "jwt": "", - "directory": "", "files": ["", "", ""] } } diff --git a/config/config.json b/config/config.json index 018daf5..c410225 100644 --- a/config/config.json +++ b/config/config.json @@ -1,19 +1,30 @@ { + "routeBasePath": "", + "publicOrigin": "http://localhost:3011", "zipDir": "./files", - "jwtSecret": "fhjekrsgvhuirs", - "sessionSecret": "fj9832mnsaf3j9adsa", - "facility": "ess", + "jwtSecret": "dev_secret", + "sessionSecret": "dev_secret", + "facility": "ILL", "zipRetentionMillis": 3600000, - "dramDirectory": "/nfs/groups/beamlines/dram", + "fileLinkRetentionMillis": 3600000, + "allowedDataDirectory": "/illdata", + "directoryPathPattern": "/illdata/*/{instrumentIds[0]}/{proposalIds[0]}/{type}", + "requiredKeywords": [ + "intrumentIds[0]", + "proposalIds[0]", + "type" + ], + "hdfViewServiceUrl": "http://localhost:8080", "testData": { - "jwt": "eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJncm91cHMiOlsiZXNzIiwibG9raSIsIm9kaW4iXSwiaWF0IjoxNTY3NDI3NzA5LCJleHAiOjE1Njc0MzEzMDl9.ENcuTBS67shghefL3wRCHxoyobwZGaFQIUvSZ0cywcE", - "directory": "./test/", - "files": ["test_file_1.txt"] + "jwt": "", + "files": [ + "test_file_1.txt" + ] }, "graylogEnabled": false, "graylogServer": "it-graylog.esss.lu.se", "graylogPort": 12201, "environment": "development", - "basePath": "", - "accessToken": "" -} + "scicatApiBasePath": "http://localhost:4200", + "scicatApiAccessToken": "" +} \ No newline at end of file diff --git a/docker-compose.yml b/docker-compose.yml deleted file mode 100644 index ecbcd65..0000000 --- a/docker-compose.yml +++ /dev/null @@ -1,13 +0,0 @@ -version: "3" -services: - node: - build: . - restart: always - ports: - - "3012:3012" - volumes: - - /nfs/groups/beamlines/:/nfs/groups/beamlines - - /users/detector/experiments/:/users/detector/experiments - - /mnt/groupdata/guide_optimizations/:/mnt/groupdata/guide_optimizations - - /tmp/zip-service:/home/node/app/files #location of the zipped files - - /ess/data/:/ess/data diff --git a/package-lock.json b/package-lock.json index f791a61..6f8f48f 100644 --- a/package-lock.json +++ b/package-lock.json @@ -1,284 +1,247 @@ { "name": "zip-service", - "version": "0.0.0", + "version": "0.1.0", "lockfileVersion": 3, "requires": true, "packages": { "": { "name": "zip-service", - "version": "0.0.0", + "version": "0.1.0", "dependencies": { "@scicatproject/scicat-sdk-ts-fetch": "^4.9.0", + "@user-office-software/duo-logger": "^2.2.1", + "archiver": "^5.3.1", + "cookie-parser": "~1.4.7", + "cors": "^2.8.6", + "ejs": "^3.1.10", + "express": "~4.22.2", + "express-fileupload": "^1.5.2", + "express-session": "^1.19.0", + "jsonwebtoken": "^9.0.3", + "node-stream-zip": "^1.16.0", + "uuid": "^11.1.1" + }, + "devDependencies": { "@types/archiver": "^5.3.1", "@types/cookie-parser": "^1.4.3", "@types/cors": "^2.8.12", "@types/express": "^4.17.21", "@types/express-fileupload": "^1.2.2", "@types/express-session": "^1.17.4", - 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"integrity": "sha512-l4Sp/DRseor9wL6EvV2+TuQn63dMkPjZ/sp9XkghTEbV9KlPS1xUsZ3u7/IQO4wxtcFB4bgpQPRcR3QCvezPcQ==" + "integrity": "sha512-l4Sp/DRseor9wL6EvV2+TuQn63dMkPjZ/sp9XkghTEbV9KlPS1xUsZ3u7/IQO4wxtcFB4bgpQPRcR3QCvezPcQ==", + "license": "ISC" }, "node_modules/xtend": { "version": "4.0.2", "resolved": "https://registry.npmjs.org/xtend/-/xtend-4.0.2.tgz", "integrity": "sha512-LKYU1iAXJXUgAXn9URjiu+MWhyUXHsvfp7mcuYm9dSUKK0/CjtrUwFAxD82/mCWbtLsGjFIad0wIsod4zrTAEQ==", "dev": true, + "license": "MIT", "engines": { "node": ">=0.4" } @@ -4160,14 +4299,29 @@ "resolved": "https://registry.npmjs.org/yn/-/yn-3.1.1.tgz", "integrity": "sha512-Ux4ygGWsu2c7isFWe8Yu1YluJmqVhxqK2cLXNQA5AcC3QfbGNpM7fu0Y8b/z16pXLnFxZYvWhd3fhBY9DLmC6Q==", "dev": true, + "license": "MIT", "engines": { "node": ">=6" } }, + "node_modules/yocto-queue": { + "version": "0.1.0", + "resolved": "https://registry.npmjs.org/yocto-queue/-/yocto-queue-0.1.0.tgz", + "integrity": "sha512-rVksvsnNCdJ/ohGc6xgPwyN8eheCxsiLM8mxuE/t/mOVqJewPuO1miLpTHQiRgTKCLexL4MeAFVagts7HmNZ2Q==", + "dev": true, + "license": "MIT", + "engines": { + "node": ">=10" + }, + "funding": { + "url": "https://github.com/sponsors/sindresorhus" + } + }, "node_modules/zip-stream": { "version": "4.1.1", "resolved": "https://registry.npmjs.org/zip-stream/-/zip-stream-4.1.1.tgz", "integrity": "sha512-9qv4rlDiopXg4E69k+vMHjNN63YFMe9sZMrdlvKnCjlCRWeCBswPPMPUfx+ipsAWq1LXHe70RcbaHdJJpS6hyQ==", + "license": "MIT", "dependencies": { "archiver-utils": "^3.0.4", "compress-commons": "^4.1.2", @@ -4181,6 +4335,7 @@ "version": "3.0.4", "resolved": "https://registry.npmjs.org/archiver-utils/-/archiver-utils-3.0.4.tgz", "integrity": "sha512-KVgf4XQVrTjhyWmx6cte4RxonPLR9onExufI1jhvw/MQ4BB6IsZD5gT8Lq+u/+pRkWna/6JoHpiQioaqFP5Rzw==", + "license": "MIT", "dependencies": { "glob": "^7.2.3", "graceful-fs": "^4.2.0", diff --git a/package.json b/package.json index 511d71e..02952ad 100644 --- a/package.json +++ b/package.json @@ -1,6 +1,6 @@ { "name": "zip-service", - "version": "0.0.0", + "version": "0.1.0", "private": true, "scripts": { "prebuild": "npx eslint --fix", @@ -13,41 +13,35 @@ }, "dependencies": { "@scicatproject/scicat-sdk-ts-fetch": "^4.9.0", - "@types/archiver": "^5.3.1", - "@types/cookie-parser": "^1.4.3", - "@types/cors": "^2.8.12", - "@types/express": "^4.17.21", - "@types/express-fileupload": "^1.2.2", - "@types/express-session": "^1.17.4", - "@types/jsonwebtoken": "^8.5.8", - "@types/node": "^20.11.25", - "@types/rimraf": "^3.0.1", "@user-office-software/duo-logger": "^2.2.1", "archiver": "^5.3.1", - "body-parser": "^1.20.0", "cookie-parser": "~1.4.7", - "cors": "^2.8.5", - "debug": "~2.6.9", + "cors": "^2.8.6", "ejs": "^3.1.10", - "express": "~4.21.2", - "express-fileupload": "^1.4.0", - "express-session": "^1.18.1", - "fs": "^0.0.1-security", - "http-errors": "~1.8.1", - "jsonwebtoken": "^8.5.1", - "node-stream-zip": "^1.14.0", - "nodemon": "^3.1.0", - "progressbar.js": "^1.1.1", - "rimraf": "^2.7.1", - "sessions": "0.0.2", - "typescript": "^5.8.2", - "uuid": "^11.1.0" + "express": "~4.22.2", + "express-fileupload": "^1.5.2", + "express-session": "^1.19.0", + "jsonwebtoken": "^9.0.3", + "node-stream-zip": "^1.16.0", + "uuid": "^11.1.1" }, "snyk": true, + "overrides": { + "lodash": "^4.18.1" + }, "devDependencies": { - "@typescript-eslint/eslint-plugin": "^4.19.0", - "@typescript-eslint/parser": "^4.19.0", - "eslint": "^7.22.0", - "ts-node-dev": "^2.0.0" + "@types/archiver": "^5.3.1", + "@types/cookie-parser": "^1.4.3", + "@types/cors": "^2.8.12", + "@types/express": "^4.17.21", + "@types/express-fileupload": "^1.2.2", + "@types/express-session": "^1.17.4", + "@types/jsonwebtoken": "^9.0.7", + "@types/node": "^20.11.25", + "@typescript-eslint/eslint-plugin": "^7.18.0", + "@typescript-eslint/parser": "^7.18.0", + "eslint": "^8.57.1", + "ts-node-dev": "^2.0.0", + "typescript": "^5.8.2" } -} +} \ No newline at end of file diff --git a/public/css/index.css b/public/css/index.css index 48fc473..4f32e73 100644 --- a/public/css/index.css +++ b/public/css/index.css @@ -12,10 +12,26 @@ h2 { font-size: 1.2em; font-weight: normal; } +h3 { + font-size: 1em; + font-weight: normal; + margin: 0 0 0.5em 0; +} a { text-decoration: none; color: #769eda; } +.button-link { + display: inline-block; + padding: 0.6em 1em; + background: #eee; + border-radius: 2px; + color: #333; +} +.button-link:hover { + background: #ddd; + color: #000; +} code { font-style: normal; background: #eee; @@ -80,6 +96,11 @@ input[type="submit"]:hover { width: 50%; padding: 1em; } +.form-stack form + form { + border-top: 1px solid #eee; + margin-top: 2em; + padding-top: 2em; +} .input{ width: 25em; } diff --git a/scripts/gen_nexus.py b/scripts/gen_nexus.py new file mode 100644 index 0000000..29fad25 --- /dev/null +++ b/scripts/gen_nexus.py @@ -0,0 +1,49 @@ +import os +import sys +import h5py +import numpy as np + +out = sys.argv[1] +size_mb = int(sys.argv[2]) + +# uint16 +target_bytes = size_mb * 1024 * 1024 +n_values = target_bytes // 2 + +rows = 1024 +cols = max(1, n_values // rows) + +os.makedirs(os.path.dirname(out), exist_ok=True) + +with h5py.File(out, "w") as f: + f.attrs["NX_class"] = "NXroot" + + entry = f.create_group("entry0") + entry.attrs["NX_class"] = "NXentry" + + instrument = entry.create_group("instrument") + instrument.attrs["NX_class"] = "NXinstrument" + + detector = instrument.create_group("detector") + detector.attrs["NX_class"] = "NXdetector" + + data = detector.create_dataset( + "data", + shape=(rows, cols), + dtype="uint16", + chunks=(256, 256), + ) + + chunk_rows = 256 + for start in range(0, rows, chunk_rows): + end = min(start + chunk_rows, rows) + data[start:end, :] = np.random.randint( + 0, + 65535, + size=(end - start, cols), + dtype=np.uint16, + ) + + entry["data"] = h5py.SoftLink("/entry0/data") + +print(f"Created {out}: {os.path.getsize(out) / 1024 / 1024:.1f} MB") diff --git a/src/app.ts b/src/app.ts index a3bc602..e1c0c3d 100644 --- a/src/app.ts +++ b/src/app.ts @@ -1,25 +1,41 @@ import fileUpload from "express-fileupload"; import session from "express-session"; import fs from "fs"; -import rimraf from "rimraf"; import { config } from "./common/config"; +import cors from "cors"; import express from "express"; import path from "path"; import cookieParser from "cookie-parser"; import { router as zipRouter } from "./routes/zip"; import { router as zipInPlaceRouter } from "./routes/zip_in_place"; import { router as downloadRouter } from "./routes/download"; +import { router as fileRouter } from "./routes/file"; import { router as indexRouter } from "./routes/index"; -import { router as uploadRouter } from "./routes/upload"; +// import { router as uploadRouter } from "./routes/upload"; import { logger } from "@user-office-software/duo-logger"; import { configureLogger } from "./common/configureLogger"; +import { getRouteBasePath } from "./common/routing"; const app = express(); app.set("views", path.join(__dirname, "views")); app.set("view engine", "ejs"); +app.use( + cors({ + exposedHeaders: [ + "Accept-Ranges", + "Content-Disposition", + "Content-Length", + "Content-Range", + ], + }), +); app.use(express.json()); app.use(express.urlencoded({ extended: true })); app.use(cookieParser()); +app.use((req, res, next) => { + res.locals.routeBasePath = getRouteBasePath(); + next(); +}); app.use(express.static("public")); app.use( @@ -28,27 +44,28 @@ app.use( resave: false, saveUninitialized: true, name: "zip-service.sid", - }) + }), ); app.use( fileUpload({ useTempFiles: true, tempFileDir: config.zipDir, debug: true, - }) + }), ); app.use("/", indexRouter); app.use("/zip", zipRouter); app.use("/zip_in_place", zipInPlaceRouter); app.use("/download", downloadRouter); -app.use("/upload", uploadRouter); +app.use("/file", fileRouter); +// app.use("/upload", uploadRouter); configureLogger( config.graylogEnabled, config.graylogServer, config.graylogPort, - config.environment + config.environment, ); // Delete all zip files in config.path_to_zipped_files older than one hour. @@ -67,14 +84,21 @@ const deleteZipFiles = () => { const now = new Date().getTime(); const endTime = new Date(stat.ctime).getTime() + 60 * 60 * 1000; if (now > endTime) { - return rimraf(path.join(config.zipDir, file), function (err3) { - if (err3) { - logger.logError("Error occured while trying to delete file: " + file, { err3 }); + return fs.rm( + path.join(config.zipDir, file), + { recursive: true, force: true }, + function (err3) { + if (err3) { + logger.logError( + "Error occured while trying to delete file: " + file, + { err3 }, + ); - return; - } - logger.logInfo("successfully deleted", {}); - }); + return; + } + logger.logInfo("successfully deleted", {}); + }, + ); } }); }); diff --git a/src/auth.ts b/src/auth.ts index 83e6718..2443462 100644 --- a/src/auth.ts +++ b/src/auth.ts @@ -1,20 +1,20 @@ import express from "express"; import { config } from "./common/config"; -import * as fs from "fs"; +import { validateFilenames } from "./common/file_utils"; import jwtLib from "jsonwebtoken"; import { logger } from "@user-office-software/duo-logger"; import { scicatDataSetAPI } from "./common/scicatAPI"; -import { OutputDatasetObsoleteDto } from "@scicatproject/scicat-sdk-ts-fetch/dist/models"; -import path from "path"; +import { OutputDatasetDto } from "@scicatproject/scicat-sdk-ts-fetch/dist/models"; export const hasFileAccess = async ( req: express.Request, - absoluteFileNames: string[], - dataset: string + fileNames: string[], + dataset: string | undefined, ): Promise => { const { jwtSecret } = config; const dataSetAPI = scicatDataSetAPI(); + let keywords = {}; if (!jwtSecret) { return { @@ -38,15 +38,13 @@ export const hasFileAccess = async ( } logger.logInfo("Request user: ", { user: jwtDecoded.username }); - const authRequest: Global.AuthRequest = { jwt: jwtDecoded, endpoint: req.originalUrl, httpMethod: req.method, - fileNames: absoluteFileNames, + fileNames: fileNames, dataset, }; - if (!authRequest.fileNames || authRequest.fileNames.length === 0) { return { hasAccess: false, @@ -55,18 +53,14 @@ export const hasFileAccess = async ( fileNames: [], }; } - for (const fileName of absoluteFileNames) { - const directory = path.dirname(fileName); - if (!fs.existsSync(directory)) { - return { - hasAccess: false, - statusCode: 404, - error: `The directory ${directory} does not exist`, - fileNames: [], - }; - } + if (!validateFilenames(fileNames)) { + return { + hasAccess: false, + statusCode: 404, + error: "The specified filenames are invalid", + fileNames: [], + }; } - const groups = jwtDecoded.groups; if (!groups) { return { @@ -76,29 +70,82 @@ export const hasFileAccess = async ( fileNames: [], }; } + logger.logInfo("User Groups: ", { groups }); + if (!dataset) { + const isAdmin = authRequest.jwt.groups.includes("admin"); + if (isAdmin) { + return { + hasAccess: true, + statusCode: 200, + error: "", + fileNames: authRequest.fileNames, + keywords: keywords, + }; + } + } const valid = await dataSetAPI - .datasetsControllerFindById({ pid: authRequest.dataset }) - .then((value: OutputDatasetObsoleteDto) => { + .datasetsV4ControllerFindByIdV4({ pid: authRequest.dataset }) + .then((value: OutputDatasetDto) => { const isPublic = value.isPublished; - const hasAccessGroup = value.accessGroups.some((item) => - new Set(authRequest.jwt.groups).has(item) + const isAdmin = authRequest.jwt.groups?.includes("admin"); + const hasAccessGroup = value.accessGroups?.some((item) => + new Set(authRequest.jwt.groups).has(item), ); + const hasOwnerGroup = authRequest.jwt.groups?.includes(value.ownerGroup); + keywords = getDatasetKeywords(value); + if (isPublic || isAdmin || hasAccessGroup || hasOwnerGroup) return true; - const hasOwnerGroup = authRequest.jwt.groups.includes(value.ownerGroup); - if (isPublic || hasAccessGroup || hasOwnerGroup) { - return true; - } return false; }) - .catch(() => { + .catch((err) => { + logger.logError("Error caught at access validation", { err }); return false; }); + // Validate Collected keywords + // avoid ".." in values + for (const [key, value] of Object.entries(keywords)) { + if (typeof value == "string" && value.includes("..")) { + return { + hasAccess: false, + statusCode: 400, + error: `value of ${key} is ambigious: contains '..' !`, + fileNames: [], + keywords: valid ? keywords : {}, + }; + } + } + return { hasAccess: valid, statusCode: valid ? 200 : 403, error: valid ? "" : "You do not have access to this resource", fileNames: valid ? authRequest.fileNames : [], + keywords: valid ? keywords : {}, }; }; + +function getDatasetKeywords(dataset: OutputDatasetDto) { + const requiredKeywords: string[] = Array.isArray(config.requiredKeywords) + ? config.requiredKeywords + : []; + const keywords: Record = {}; + const datasetValues = dataset as unknown as Record; + for (const keyword of requiredKeywords) { + const match = keyword.match(/^([^[\]]+)\[(\d+)\]$/); + + if (match) { + const [, property, index] = match; + const value = datasetValues[property]; + + keywords[keyword] = Array.isArray(value) + ? value[Number(index)] + : undefined; + } else { + keywords[keyword] = datasetValues[keyword]; + } + } + + return keywords; +} diff --git a/src/common/config.ts b/src/common/config.ts index e8269f5..14f982c 100644 --- a/src/common/config.ts +++ b/src/common/config.ts @@ -7,4 +7,5 @@ const configBuffer: string = fs.readFileSync(configFilePath, { flag: "r", }); +// eslint-disable-next-line @typescript-eslint/no-explicit-any export const config: Record = JSON.parse(configBuffer); diff --git a/src/common/file_utils.ts b/src/common/file_utils.ts new file mode 100644 index 0000000..ba0c1dd --- /dev/null +++ b/src/common/file_utils.ts @@ -0,0 +1,163 @@ +import * as fs from "fs"; +import { config } from "../common/config"; +import { logger } from "@user-office-software/duo-logger"; +import path from "path"; + +export interface FileLink { + filename: string; + filepath: string; + token: string; + expiresAt: number; + datasetId?: string; + directory?: string; +} +export interface FileResolution { + statusCode: number; + filename?: string; + error?: string; + folders?: string[]; +} + +export function validateFilenames(filenames: string[]): boolean { + for (const filename of filenames) { + if (filename.includes("..")) { + return false; + } + } + return true; +} + +export function resolvePattern( + pattern: string, + keywords: Record, +): string { + const resolved = pattern.replace(/\{([^}]+)\}/g, (_, key) => { + try { + const value = keywords[key]; + if (value === undefined) { + throw new Error(`Missing keyword '${key}'`); + } + if (config.facility === "ILL") { + if (key.startsWith("proposalId")) { + return value.startsWith("internalUse") ? value : "exp_" + value; + } else if (key == "type") { + return value.startsWith("raw") ? "rawdata" : value; + } else if (key.startsWith("instrumentId")) { + return value.toLowerCase(); + } + } + return value; + } catch { + return undefined; + } + }); + if (!resolved || !validateResolvedPattern(resolved)) + throw new Error("The resolved path is not valid or unaccessable !"); + return resolved; +} + +export function validateResolvedPattern(pattern: string): boolean { + const allowed = path.resolve(config.allowedDataDirectory); + const patternDir = path.resolve(pattern); + + const relative = path.relative(allowed, patternDir); + + return ( + relative !== "" && !relative.startsWith("..") && !path.isAbsolute(relative) + ); +} + +export function findFile(dirPattern: string, filename: string): string[] { + const stars = (dirPattern.match(/\*/g) ?? []).length; + if (stars > 1) { + throw new Error("Only a single '*' is supported."); + } + try { + if (stars === 0) { + const filePath = path.join(dirPattern, filename); + return fs.existsSync(filePath) ? [path.dirname(filePath)] : []; + } + + const [prefix, suffix] = dirPattern.split("*"); + const parentDir = path.resolve(prefix); + const normalizedSuffix = suffix.replace(/^[/\\]/, ""); + const matchedFolders: string[] = []; + + fs.readdirSync(parentDir, { withFileTypes: true }) + .filter((entry) => entry.isDirectory()) + .forEach((entry) => { + const pathFromPattern = path.join( + parentDir, + entry.name, + normalizedSuffix, + ); + + const filePath = path.join(pathFromPattern, filename); + if (fs.existsSync(filePath)) { + matchedFolders.push(path.dirname(filePath)); + } + }); + return matchedFolders; + } catch (err) { + logger.logError("Error searching file directories", { err }); + return []; + } +} + +export function resolveFilePath( + filename: string, + keywords: Record = {}, +): FileResolution { + // filename is an Absolute Path case + if (path.isAbsolute(filename)) { + return { + statusCode: 400, + error: "Absolute filenames are not supported", + }; + } + const dataRoot = config.allowedDataDirectory; + const dirPattern = config.directoryPathPattern; + if (!dataRoot) { + return { + statusCode: 500, + error: "Data root directory is not configured", + }; + } + // directoryPattern must be configurad + if (!dirPattern) { + return { + statusCode: 400, + error: "directoryPathPattern must be specified", + }; + } + + let resolvedPattern: string; + try { + resolvedPattern = resolvePattern(dirPattern, keywords); + } catch (err) { + logger.logError("Error resolving file path pattern", { err }); + return { + statusCode: 400, + error: + err instanceof Error ? err.message : "File path pattern is invalid", + }; + } + const matchedFolders = findFile(resolvedPattern, filename); + if (matchedFolders.length === 0) { + return { + statusCode: 404, + error: "File not found", + }; + } else if (matchedFolders.length > 1) { + return { + statusCode: 409, + error: "File exists in multiple directories", + folders: matchedFolders, + }; + } + return { + statusCode: 200, + filename, + folders: matchedFolders, + }; +} diff --git a/src/common/routing.ts b/src/common/routing.ts new file mode 100644 index 0000000..975a2c2 --- /dev/null +++ b/src/common/routing.ts @@ -0,0 +1,23 @@ +import { config } from "./config"; + +export function getRouteBasePath(): string { + const configured = config.routeBasePath; + if (typeof configured !== "string" || !configured || configured === "/") { + return ""; + } + + const prefixedPath = configured.startsWith("/") + ? configured + : `/${configured}`; + + return prefixedPath.endsWith("/") ? prefixedPath.slice(0, -1) : prefixedPath; +} + +export function getPublicOrigin(): string | null { + const configured = config.publicOrigin; + if (typeof configured !== "string" || !configured) { + return null; + } + + return configured.endsWith("/") ? configured.slice(0, -1) : configured; +} diff --git a/src/common/scicatAPI.ts b/src/common/scicatAPI.ts index 00d3447..e9b851a 100644 --- a/src/common/scicatAPI.ts +++ b/src/common/scicatAPI.ts @@ -1,23 +1,27 @@ -import { Configuration, DatasetsApi } from "@scicatproject/scicat-sdk-ts-fetch"; +import { + Configuration, + DatasetsV4Api, +} from "@scicatproject/scicat-sdk-ts-fetch"; import { config } from "./config"; -let datasetsApiInstance: DatasetsApi | null = null; +let datasetsApiInstance: DatasetsV4Api | null = null; -export function scicatDataSetAPI(): DatasetsApi { - const { basePath, accessToken } = config; +export function scicatDataSetAPI(): DatasetsV4Api { + const { scicatApiBasePath, scicatApiAccessToken } = config; if (!datasetsApiInstance) { - - if (!basePath || !accessToken) { - throw new Error("SciCat API configuration is missing: Check SCICAT_API_BASE_PATH and SCICAT_API_ACCESS_TOKEN."); + if (!scicatApiBasePath || !scicatApiAccessToken) { + throw new Error( + "SciCat API configuration is missing: Check SCICAT_API_BASE_PATH and SCICAT_API_ACCESS_TOKEN.", + ); } const apiConfig = new Configuration({ - basePath , - accessToken, + basePath: scicatApiBasePath, + accessToken: scicatApiAccessToken, }); - datasetsApiInstance = new DatasetsApi(apiConfig); + datasetsApiInstance = new DatasetsV4Api(apiConfig); } return datasetsApiInstance; diff --git a/src/index.ts b/src/index.ts index afa16b6..10653d9 100644 --- a/src/index.ts +++ b/src/index.ts @@ -1,11 +1,9 @@ import app from "./app"; -import cors from "cors"; import http from "http"; import { logger } from "@user-office-software/duo-logger"; const port = parseInt(process.env.PORT || "3011", 10); app.set("port", port); -app.use(cors()); const server = http.createServer(app); server.listen(port); diff --git a/src/routes/file.ts b/src/routes/file.ts new file mode 100644 index 0000000..5d8d3a2 --- /dev/null +++ b/src/routes/file.ts @@ -0,0 +1,451 @@ +import express from "express"; +import * as fs from "fs"; +import { config } from "../common/config"; +import { + FileLink, + FileResolution, + validateFilenames, + resolveFilePath, +} from "../common/file_utils"; +import { hasFileAccess } from "../auth"; +import { logger } from "@user-office-software/duo-logger"; +import path from "path"; +import { v4 as uuidv4 } from "uuid"; +import { getPublicOrigin, getRouteBasePath } from "../common/routing"; + +export const router = express.Router(); + +const fileLinks = new Map(); +const fileLinkRetentionMillis = + config.fileLinkRetentionMillis || 60 * 60 * 1000; + +router.get("/", (req, res) => { + res.render("file_form", getFormDefaults()); +}); + +router.post("/", async (req, res) => { + cleanupExpiredFileLinks(); + + const bodyFileNames = getBodyFileNames(req.body); + + if (!Array.isArray(bodyFileNames) || bodyFileNames.length !== 1) { + return res.status(400).send({ + error: "Exactly one file must be specified", + }); + } + + if (typeof bodyFileNames[0] !== "string") { + return res.status(400).send({ + error: "File must be a string", + }); + } + + const bodyFileName = bodyFileNames[0]; + + if (path.isAbsolute(bodyFileName)) { + return res.status(400).send({ + error: "Invalid filename, Absolute Path was given", + }); + } else if (!validateFilenames([bodyFileName])) { + return res.status(400).send({ + error: "Invalid filename, Contains '..' ", + }); + } else if (!config.directoryPathPattern) { + return res.status(400).send({ + error: "directoryPathPattern must be specified", + }); + } + + return createFileLink(req, res); +}); + +router.head("/download", (req, res) => { + return sendFileHead(req, res, "attachment"); +}); + +router.head("/stream", (req, res) => { + return sendFileHead(req, res, "inline"); +}); + +router.get("/open", (req, res) => { + return openFile(req, res); +}); + +router.get("/download", (req, res) => { + return sendFile(req, res, "attachment"); +}); + +router.get("/stream", (req, res) => { + return sendFile(req, res, "inline"); +}); + +function sendFile( + req: express.Request, + res: express.Response, + disposition: "attachment" | "inline", +) { + const fileData = getFileLink(req); + if (!fileData) { + return res.status(403).send("This file link is no longer valid"); + } + + return sendResolvedFile( + fileData.filepath, + res, + disposition, + req.headers.range, + ); +} + +function sendFileHead( + req: express.Request, + res: express.Response, + disposition: "attachment" | "inline", +) { + const fileData = getFileLink(req); + if (!fileData) { + return res.status(403).end(); + } + const fileStat = getFileStat(fileData.filepath); + if (!fileStat || fileStat.isDirectory()) { + return res.status(404).end(); + } + + return sendResolvedFileHead(fileData.filepath, res, disposition); +} + +function openFile(req: express.Request, res: express.Response) { + const fileData = getFileLink(req); + if (!fileData) { + return res.status(403).send("This file link is no longer valid"); + } + + const streamUrl = createFileAccessUrl("stream", fileData.token, true); + if (!streamUrl) { + return res.status(500).send("Service public origin is not configured"); + } + + const hdfUrl = createHdfViewUrl(streamUrl, fileData.filename); + if (!hdfUrl) { + return res.status(500).send("HDF View service URL is not configured"); + } + + return res.redirect(303, hdfUrl); +} + +async function createFileLink(req: express.Request, res: express.Response) { + const datasetId = req.body.dataset || req.body.datasetId; + const filename = getBodyFileNames(req.body)[0] as string; + const fileAction = + typeof req.body.fileAction === "string" ? req.body.fileAction : ""; + + const authResponse = await hasFileAccess(req, [filename], datasetId); + if (!authResponse.hasAccess) { + logger.logError("Error accessing file", { + statusCode: authResponse.statusCode, + error: authResponse.error, + }); + + return res.status(authResponse.statusCode).send({ + error: authResponse.error, + }); + } + + return createResolvedFileLink( + req, + res, + datasetId, + filename, + authResponse.keywords ?? {}, + fileAction, + ); +} + +function createResolvedFileLink( + req: express.Request, + res: express.Response, + datasetId: string, + filename: string, + keywords?: Record, + fileAction = "", +) { + const resolution: FileResolution = resolveFilePath(filename, keywords); + + if (resolution.error) { + return res.status(resolution.statusCode).send({ + error: resolution.error, + folders: resolution.folders, + }); + } + + const filepath = path.join(resolution.folders?.[0], filename); + + if (!filepath) { + return res.status(500).send({ + error: "File path could not be resolved", + }); + } + const fileStat = getFileStat(filepath); + + if (!fileStat || fileStat.isDirectory()) { + return res.status(404).send({ + error: "File not found", + }); + } + + const token = uuidv4(); + + fileLinks.set(token, { + filename, + filepath, + datasetId, + token, + expiresAt: Date.now() + fileLinkRetentionMillis, + }); + + const downloadUrl = createFileAccessUrl("download", token); + const streamUrl = createFileAccessUrl("stream", token); + const openUrl = createFileAccessUrl("open", token); + + if (fileAction === "Download") { + return res.redirect(303, downloadUrl); + } + + if (fileAction === "Open") { + return res.redirect(303, openUrl); + } + + return res.status(201).send({ + fileName: filename, + size: fileStat.size, + expiresAt: new Date(Date.now() + fileLinkRetentionMillis).toISOString(), + downloadUrl, + streamUrl, + openUrl, + }); +} + +function sendResolvedFile( + absoluteFileName: string, + res: express.Response, + disposition: "attachment" | "inline", + rangeHeader?: string, +) { + const fileStat = getFileStat(absoluteFileName); + if (!fileStat || fileStat.isDirectory()) { + return res.status(404).send("File not found"); + } + + const fileName = path.basename(absoluteFileName); + const contentType = getContentType(fileName); + const range = parseRange(rangeHeader, fileStat.size); + + res.setHeader("Accept-Ranges", "bytes"); + res.setHeader("Content-Type", contentType); + res.setHeader( + "Content-Disposition", + getContentDisposition(disposition, fileName), + ); + + if (!range) { + res.setHeader("Content-Length", fileStat.size); + + return pipeFile(absoluteFileName, res); + } + + if (!range.valid) { + res.statusCode = 416; + res.setHeader("Content-Range", `bytes */${fileStat.size}`); + + return res.end(); + } + + const { start, end } = range; + res.statusCode = 206; + res.setHeader("Content-Range", `bytes ${start}-${end}/${fileStat.size}`); + res.setHeader("Content-Length", end - start + 1); + + return pipeFile(absoluteFileName, res, { start, end }); +} + +function sendResolvedFileHead( + absoluteFileName: string, + res: express.Response, + disposition: "attachment" | "inline", +) { + const fileStat = getFileStat(absoluteFileName); + if (!fileStat || fileStat.isDirectory()) { + return res.status(404).end(); + } + + const fileName = path.basename(absoluteFileName); + res.setHeader("Accept-Ranges", "bytes"); + res.setHeader("Content-Type", getContentType(fileName)); + res.setHeader( + "Content-Disposition", + getContentDisposition(disposition, fileName), + ); + res.setHeader("Content-Length", fileStat.size); + + return res.status(200).end(); +} + +function createFileAccessUrl( + action: "download" | "stream" | "open", + token: string, + absolute = false, +) { + const pathname = `/file/${action}?token=${token}`; + const prefixedPath = `${getRouteBasePath()}${pathname}`; + + if (!absolute) { + return prefixedPath; + } + + const origin = getPublicOrigin(); + return origin ? `${origin}${prefixedPath}` : null; +} + +function createHdfViewUrl(fileUrl: string, filename?: string) { + const url = new URL(config.hdfViewServiceUrl); + if (!url) { + return null; + } + url.searchParams.set("url", encodeURIComponent(fileUrl)); + if (filename) { + url.searchParams.set("label", filename); + } + return url.toString(); +} + +function getFileLink(req: express.Request) { + cleanupExpiredFileLinks(); + + const token = typeof req.query.token === "string" ? req.query.token : ""; + const fileData = fileLinks.get(token); + if ( + !fileData || + fileData.token !== token || + Date.now() > fileData.expiresAt + ) { + return null; + } + + return fileData; +} + +function cleanupExpiredFileLinks() { + const now = Date.now(); + + for (const [id, fileLink] of fileLinks) { + if (now > fileLink.expiresAt) { + fileLinks.delete(id); + } + } +} + +function getBodyFileNames(body: Record) { + if (Array.isArray(body.files)) { + return body.files; + } + if (body.fileName) { + return [body.fileName]; + } + if (body.file) { + return [body.file]; + } + return []; +} + +function getFileStat(fileName: string) { + try { + return fs.statSync(fileName); + } catch (err) { + logger.logError("Error getting file stat", { err }); + + return null; + } +} + +function getContentType(fileName: string) { + const extension = path.extname(fileName).toLowerCase(); + + if ( + extension === ".h5" || + extension === ".hdf5" || + extension === ".hdf" || + extension === ".nxs" + ) { + return "application/x-hdf5"; + } + return "application/octet-stream"; +} + +function getContentDisposition( + disposition: "attachment" | "inline", + fileName: string, +) { + const safeFileName = fileName.replace(/[\r\n"\\]/g, "_"); + return `${disposition}; filename="${safeFileName}"`; +} + +function pipeFile( + fileName: string, + res: express.Response, + options?: { start: number; end: number }, +) { + const readStream = fs.createReadStream(fileName, options); + readStream.on("error", (err) => { + logger.logError("Error reading file stream", { err }); + if (!res.headersSent) { + return res.status(500).send("Unable to read file"); + } + return res.end(); + }); + return readStream.pipe(res); +} + +function parseRange(rangeHeader: string | undefined, fileSize: number) { + if (!rangeHeader) { + return null; + } + + const match = rangeHeader.match(/^bytes=(\d*)-(\d*)$/); + if (!match) { + return { valid: false as const }; + } + + const [, startValue, endValue] = match; + let start: number; + let end: number; + + if (!startValue && !endValue) { + return { valid: false as const }; + } + + if (!startValue) { + const suffixLength = parseInt(endValue, 10); + if (suffixLength <= 0) { + return { valid: false as const }; + } + start = Math.max(fileSize - suffixLength, 0); + end = fileSize - 1; + } else { + start = parseInt(startValue, 10); + end = endValue ? parseInt(endValue, 10) : fileSize - 1; + } + + if (start >= fileSize || end >= fileSize || start > end) { + return { valid: false as const }; + } + return { valid: true as const, start, end }; +} + +function getFormDefaults() { + return { + jwt: config.testData.jwt || "", + directory: config.testData.directory || "", + dataset: "", + file0: config.testData?.files[0] || "", + }; +} diff --git a/src/routes/index.ts b/src/routes/index.ts index 16268a8..b3e32f5 100644 --- a/src/routes/index.ts +++ b/src/routes/index.ts @@ -5,7 +5,6 @@ export const router = express.Router(); router.get("/", function (req, res) { res.render("index", { jwt: config.testData.jwt || "", - directory: config.testData.directory || "", dataset: "", file0: config.testData?.files[0] || "", file1: config.testData?.files[1] || "", diff --git a/src/routes/upload.ts b/src/routes/upload.ts index 93555dd..c74fb4a 100644 --- a/src/routes/upload.ts +++ b/src/routes/upload.ts @@ -1,13 +1,12 @@ import express from "express"; -export const router = express.Router(); - -import * as fs from "fs"; import jwt from "jsonwebtoken"; import path from "path"; +import * as fs from "fs"; import StreamZip from "node-stream-zip"; import { config } from "../common/config"; import { logger } from "@user-office-software/duo-logger"; +export const router = express.Router(); const homePath = config.dramDirectory; router.post("/", function (req, res) { @@ -112,7 +111,7 @@ router.post("/", function (req, res) { logger.logInfo( `Extracted the file(s) from ${zipfileName} to ${savePath}`, - {} + {}, ); zip.close(); diff --git a/src/routes/zip.ts b/src/routes/zip.ts index e8f20c9..539ba2d 100644 --- a/src/routes/zip.ts +++ b/src/routes/zip.ts @@ -1,45 +1,102 @@ +import archiver from "archiver"; import express from "express"; +import path from "path"; import * as fs from "fs"; import { config } from "../common/config"; -import archiver from "archiver"; +import { validateFilenames, resolveFilePath } from "../common/file_utils"; import { hasFileAccess } from "../auth"; import { logger } from "@user-office-software/duo-logger"; -import path from "path"; import { v4 as uuidv4 } from "uuid"; export const router = express.Router(); +interface ResolvedPaths { + statusCode: number; + paths: string[]; + error?: string; +} + +function resolvePaths( + filenames: string[], + keywords: Record = {}, +): ResolvedPaths { + const absPaths: string[] = []; + for (const file of filenames) { + const resolvedFile = resolveFilePath(file, keywords); + if (resolvedFile.error) { + return { + statusCode: resolvedFile.statusCode, + paths: [], + error: resolvedFile.error, + }; + } + + if (!resolvedFile.filename || !resolvedFile.folders?.[0]) { + return { + statusCode: 500, + paths: [], + error: "File path could not be resolved", + }; + } + + absPaths.push(path.join(resolvedFile.folders[0], resolvedFile.filename)); + } + return { + statusCode: 200, + paths: absPaths, + }; +} + +router.get("/", (req, res) => { + res.render("zip_form", getFormDefaults()); +}); + /* POST zip */ /** - * Request zipping of files. Require directory:string and files:string[] in the request body + * Request zipping of files. Require files:string[] in the request body */ router.post("/", async (req, res) => { - const bodyDirectory = req.body.directory; const bodyFileNames = req.body.files; const datasetId = req.body.dataset; - const absoluteFileNames = transformPaths(bodyDirectory, bodyFileNames); - logger.logInfo("Request has been submitted ", { - fileNames: absoluteFileNames, - }); - - const { hasAccess, statusCode, error, fileNames } = await hasFileAccess( - req, - absoluteFileNames, - datasetId - ); + if (!validateFilenames(bodyFileNames)) + return res.status(400).send({ + error: "Invalid filenames, Contains '..' ", + }); - if (!hasAccess) { - logger.logError("Error: ", { statusCode, error }); + let absoluteFilePaths: string[] = []; + if (config.directoryPathPattern) { + // Resolve filePaths from dataset + const authResponse = await hasFileAccess(req, bodyFileNames, datasetId); + if (!authResponse.hasAccess) { + logger.logError("Error accessing files", { + statusCode: authResponse.statusCode, + error: authResponse.error, + }); - return res.render("error", { statusCode, error }); + return res.status(authResponse.statusCode).send({ + error: authResponse.error, + }); + } + const resolvedPaths = resolvePaths(bodyFileNames, authResponse.keywords); + if (resolvedPaths.error) { + return res.status(resolvedPaths.statusCode).send(resolvedPaths.error); + } + absoluteFilePaths = resolvedPaths.paths; + } else { + return res + .status(400) + .send("No data Directory Pattern configuration given"); } + + const files = absoluteFilePaths; + try { const zipFileName = uuidv4() + "_" + new Date().getTime() + ".zip"; logger.logInfo("Zip file name : " + zipFileName, {}); - req.session.zipData = initSession(absoluteFileNames, zipFileName, datasetId); - res.render("zipping", { total: fileNames.length, zipFileName }); + req.session.zipData = initSession(files, zipFileName, datasetId); + res.render("zipping", { total: files.length, zipFileName }); if (!fs.existsSync(config.zipDir)) { fs.mkdirSync(config.zipDir); } @@ -63,23 +120,24 @@ router.post("/", async (req, res) => { req.session.save(); }); archive.on("entry", function () { - req.session.zipData.files[req.session.zipData.currentFileIndex].progress = 1; + req.session.zipData.files[req.session.zipData.currentFileIndex].progress = + 1; req.session.zipData.currentFileIndex += 1; req.session.zipData.zipSizeOnLastCompletedEntry = getFileSizeInBytes( - config.zipDir + "/" + zipFileName + config.zipDir + "/" + zipFileName, ); req.session.save(); }); archive.pipe(fileStream); try { - fileNames.map((fileName: string) => { + files.map((fileName: string) => { const directory = path.dirname(fileName); if (fs.existsSync(directory)) { archive.file(fileName, { name: fileName }); } }); } catch (error) { - logger.logError("Failed zipping " + absoluteFileNames, {}); + logger.logError("Failed zipping " + files, {}); } archive.finalize(); } catch (error) { @@ -90,9 +148,14 @@ router.post("/", async (req, res) => { }); // Polled periodically from the zipping view. Returns current progress or resulting file name if the zipping is done -router.get("/", (req, res) => { - const { currentFileIndex, ready, files, zipFileName, zipSizeOnLastCompletedEntry } = - req.session.zipData; +router.get("/status", (req, res) => { + const { + currentFileIndex, + ready, + files, + zipFileName, + zipSizeOnLastCompletedEntry, + } = req.session.zipData; const zipSize = getFileSizeInBytes(config.zipDir + "/" + zipFileName); if (ready || currentFileIndex === files.length) { return res.send(req.session.zipData); @@ -103,13 +166,6 @@ router.get("/", (req, res) => { return res.send(req.session.zipData); }); -const transformPaths = (directory: string, fileNames: string[]) => { - const absoluteFileNames = fileNames.map((fileName) => - path.isAbsolute(fileName) ? fileName : path.join(directory, fileName) - ); - - return absoluteFileNames; -}; const getFileSizeInBytes = (filename: string) => { try { const stats = fs.statSync(filename); @@ -123,7 +179,7 @@ const getFileSizeInBytes = (filename: string) => { const initSession = ( absoluteFileNames: string[], zipFileName: string, - datasetId: string + datasetId: string, ): Global.ZipData => ({ currentFileIndex: 0, files: absoluteFileNames.map((fileName) => ({ @@ -136,3 +192,14 @@ const initSession = ( ready: false, datasetId, }); + +function getFormDefaults() { + return { + jwt: config.testData.jwt || "", + directory: config.testData.directory || "", + dataset: "", + file0: config.testData?.files[0] || "", + file1: config.testData?.files[1] || "", + file2: config.testData?.files[2] || "", + }; +} diff --git a/src/routes/zip_in_place.ts b/src/routes/zip_in_place.ts index 82c8d2a..6d28125 100644 --- a/src/routes/zip_in_place.ts +++ b/src/routes/zip_in_place.ts @@ -1,36 +1,91 @@ +import archiver from "archiver"; import express from "express"; +import path from "path"; import * as fs from "fs"; -import archiver from "archiver"; +import { config } from "../common/config"; +import { validateFilenames, resolveFilePath } from "../common/file_utils"; import { hasFileAccess } from "../auth"; import { logger } from "@user-office-software/duo-logger"; -import path from "path"; import { v4 as uuidv4 } from "uuid"; export const router = express.Router(); +interface ResolvedPaths { + statusCode: number; + paths: string[]; + error?: string; +} + +function resolvePaths( + filenames: string[], + keywords: Record = {}, +): ResolvedPaths { + const absPaths: string[] = []; + for (const file of filenames) { + const resolvedFile = resolveFilePath(file, keywords); + if (resolvedFile.error) { + return { + statusCode: resolvedFile.statusCode, + paths: [], + error: resolvedFile.error, + }; + } + + if (!resolvedFile.filename || !resolvedFile.folders?.[0]) { + return { + statusCode: 500, + paths: [], + error: "File path could not be resolved", + }; + } + + absPaths.push(path.join(resolvedFile.folders[0], resolvedFile.filename)); + } + return { + statusCode: 200, + paths: absPaths, + }; +} + /* POST zip */ router.post("/", async function (req: express.Request, res: express.Response) { - const bodyDirectory = req.body.directory; const bodyFileNames = req.body.files; const datasetId = req.body.dataset; - const absoluteFileNames = transformPaths(bodyDirectory, bodyFileNames); - logger.logInfo("Request has been submitted", { - fileNames: absoluteFileNames, - }); - - const { hasAccess, statusCode, error, fileNames } = await hasFileAccess( - req, - absoluteFileNames, - datasetId - ); - const readOpts = { highWaterMark: Math.pow(2, 20) }; + if (!validateFilenames(bodyFileNames)) + return res.status(400).send({ + error: "Invalid filenames, Contains '..' ", + }); - if (!hasAccess) { - logger.logError(`error zipping file ${error}`, {}); - return res.render("error", { statusCode, error }); + let absoluteFilePaths: string[] = []; + if (config.directoryPathPattern) { + // Resolve filePaths from dataset + const authResponse = await hasFileAccess(req, bodyFileNames, datasetId); + if (!authResponse.hasAccess) { + logger.logError("Error accessing files", { + statusCode: authResponse.statusCode, + error: authResponse.error, + }); + + return res.status(authResponse.statusCode).send({ + error: authResponse.error, + }); + } + const resolvedPaths = resolvePaths(bodyFileNames, authResponse.keywords); + if (resolvedPaths.error) { + return res.status(resolvedPaths.statusCode).send(resolvedPaths.error); + } + absoluteFilePaths = resolvedPaths.paths; + } else { + return res + .status(400) + .send("No data Directory Pattern configuration given"); } + const files = absoluteFilePaths; + + const readOpts = { highWaterMark: Math.pow(2, 20) }; + try { // ** // Compression levels @@ -71,7 +126,7 @@ router.post("/", async function (req: express.Request, res: express.Response) { logger.logInfo(`zip file name ${zipFileName}`, {}); - fileNames.map((file) => { + files.map((file) => { if (file.length == 0 || fs.lstatSync(file).isDirectory()) return; const read = makeReadStream(file); @@ -80,9 +135,12 @@ router.post("/", async function (req: express.Request, res: express.Response) { }); archive.finalize(); } catch (error) { - res.statusCode = 500; - res.send(`The files could not be zipped ${error.message}`); - return; + const message = error instanceof Error ? error.message : "Unknown error"; + logger.logError("The files could not be zipped", { error }); + if (!res.headersSent) { + return res.status(500).send(`The files could not be zipped ${message}`); + } + res.end(); } function makeReadStream(filepath: string) { @@ -97,10 +155,3 @@ router.post("/", async function (req: express.Request, res: express.Response) { return read; } }); -const transformPaths = (directory: string, fileNames: string[]) => { - const absoluteFileNames = fileNames.map((fileName) => - path.isAbsolute(fileName) ? fileName : path.join(directory, fileName) - ); - - return absoluteFileNames; -}; diff --git a/src/types/global.d.ts b/src/types/global.d.ts index f55c2d8..0c7d9e9 100644 --- a/src/types/global.d.ts +++ b/src/types/global.d.ts @@ -33,6 +33,7 @@ declare global { statusCode: number; error?: string; fileNames: string[]; + keywords?: Record; } } } diff --git a/src/types/node-stream-zip.d.ts b/src/types/node-stream-zip.d.ts index 4516e31..06d9d0a 100644 --- a/src/types/node-stream-zip.d.ts +++ b/src/types/node-stream-zip.d.ts @@ -27,11 +27,11 @@ declare module "node-stream-zip" { } class ZipEntry { - name: string - isDirectory: boolean - isFile: boolean - comment: string - size: number + name: string; + isDirectory: boolean; + isFile: boolean; + comment: string; + size: number; } class StreamZip { @@ -45,13 +45,13 @@ declare module "node-stream-zip" { entry(entry:string) :ZipEntry entries() : ZipEntry[] - entriesCount: number + entriesCount: number; - stream(entry:string, callback: (err: Error | null, stream?: Stream) =>void):void - entryDataSync(entry:string):Buffer - openEntry(entry: string, callback: (err: Error | null, entry?: ZipEntry) => void, sync: boolean):void - extract(entry: string, outPath: string, callback: (err?: Error) => void): void - close(callback?: (err?: Error) => void): void + stream(entry:string, callback: (err: Error | null, stream?: Stream) =>void):void + entryDataSync(entry:string):Buffer + openEntry(entry: string, callback: (err: Error | null, entry?: ZipEntry) => void, sync: boolean):void + extract(entry: string, outPath: string, callback: (err?: Error) => void): void + close(callback?: (err?: Error) => void): void } export = StreamZip; } diff --git a/src/views/error.ejs b/src/views/error.ejs index c58ac00..001db37 100644 --- a/src/views/error.ejs +++ b/src/views/error.ejs @@ -1,7 +1,7 @@ - +
diff --git a/src/views/file_form.ejs b/src/views/file_form.ejs new file mode 100644 index 0000000..6d8530c --- /dev/null +++ b/src/views/file_form.ejs @@ -0,0 +1,78 @@ + + + + + + + zip-service file + + +
+

Single file

+
+
+

+ Submit a POST request to /file with a jwt, dataset, + and file name. Use directory for direct path resolution, or omit it + to resolve the path from the configured dataset keywords. +

+

Back to forms

+
+
+
+
JWT
+ +
+
+
Directory
+ +
+
+
Dataset PID
+ +
+
+
File
+ +
+
+ +
+
+ +
+
+ +
+
+
+
+ + diff --git a/src/views/index.ejs b/src/views/index.ejs index fc31ff6..90fe415 100644 --- a/src/views/index.ejs +++ b/src/views/index.ejs @@ -6,7 +6,7 @@ name="viewport" content="width=device-width,initial-scale=1,shrink-to-fit=no" /> - + zip-service @@ -20,80 +20,19 @@

UI for testing zip-service. While implementation details of file authorization may vary between facilities, a valid jwt (JSON Web - Token) is required for all of them. This can be specified either as - a cookie (all requests), a url parameter (GET) or in the body - (POST). + Token) is required. This can be specified either as a cookie, a url + parameter for download requests, or in a POST body.

- The default value of directory corresponds to the root - of the scientific data directory tree. The specified files must all be directly under this directory. -

-

- By submitting the form on the right, a http POST is made to /zip, with the specified jwt, directory and file array as its body. The jwt can be omitted if already present as a cookie. If not, one has to be generated using the same secret as the zip-service, and a JSON payload containing the keys necessary for authorization. + Use the zip form to create a zip archive from several files, or the + file form to create a temporary download/stream link for one file.

-
-
-
JWT
-
-
-
Directory
- -
-
-
Dataset PID
- -
-
-
File 1
- -
-
-
File 2
- -
-
-
File 3
- -
-
- -
-
- -
-
+
+

Forms

+

Zip files

+

Single file

+
diff --git a/src/views/zip_form.ejs b/src/views/zip_form.ejs new file mode 100644 index 0000000..f77dac2 --- /dev/null +++ b/src/views/zip_form.ejs @@ -0,0 +1,97 @@ + + + + + + + zip-service zip + + +
+

Zip files

+
+
+

+ Submit a POST request to /zip with a jwt, dataset, + directory, and file array. The result is a progress page that links + to the generated zip file when processing is complete. +

+

Back to forms

+
+
+
+
JWT
+ +
+
+
Directory
+ +
+
+
Dataset PID
+ +
+
+
File 1
+ +
+
+
File 2
+ +
+
+
File 3
+ +
+
+ +
+
+ +
+
+
+
+ + diff --git a/src/views/zipping.ejs b/src/views/zipping.ejs index 23cc975..9da83bd 100644 --- a/src/views/zipping.ejs +++ b/src/views/zipping.ejs @@ -2,9 +2,9 @@ - - - + + +