From 97ecee5590fa99c0f7a5c643049c5efc4138e6ac Mon Sep 17 00:00:00 2001 From: Bill Duncan Date: Fri, 14 Aug 2026 16:34:53 -0400 Subject: [PATCH 1/2] Add Pain Ontology to OBO webpage --- ontology/pain.md | 47 +++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 47 insertions(+) create mode 100644 ontology/pain.md diff --git a/ontology/pain.md b/ontology/pain.md new file mode 100644 index 000000000..91983440f --- /dev/null +++ b/ontology/pain.md @@ -0,0 +1,47 @@ +--- +layout: ontology_detail +id: pain +title: The Pain Ontology +contact: + email: wdduncan@gmail.com + github: wdduncan + label: Bill Duncan + orcid: 0000-0001-9625-1899 +description: The Pain Ontology formalizes IASP's definition of pain as both an unpleasant physical and emotional experience, and it provides terms and axioms to represent the multidimensional aspects of pain, such as temporality, quality, extent, biological mechanism, and anatomical location. +domain: health +homepage: https://github.com/uflcod/pain-ontology +license: + label: CC BY 4.0 + url: https://creativecommons.org/licenses/by/4.0/ +preferredPrefix: PAIN +products: +- id: pain.owl + title: The Pain Ontology (OWL edition) + description: reasoned version of PAIN released in rdf/xml format +- id: pain.obo + title: The Pain Ontology (OBO edition) + description: reasoned version of PAIN released in OBO format +- id: pain-non-classified.owl + title: The Pain Ontology, non-classified (OWL edition) + description: non-reasoned version of PAIN released in rdf/xml format +- id: pain-non-classified.obo + title: The Pain Ontology, non-classified (OBO edition) + description: non-reasoned version of PAIN released in OBO format +- id: pain-base.owl + title: The Pain Ontology, base module (OWL edition) + description: base module of PAIN released in rdf/xml format +- id: pain-base.obo + title: The Pain Ontology, base module (OBO edition) + description: base module of PAIN released in OBO format +- id: pain-simple.owl + title: The Pain Ontology, simple (OWL edition) + description: simplified version of PAIN released in rdf/xml format +- id: pain-simple.obo + title: The Pain Ontology, simple (OBO edition) + description: simplified version of PAIN released in OBO format +repository: https://github.com/uflcod/pain-ontology +tracker: https://github.com/uflcod/pain-ontology/issues +activity_status: active +--- + +The Pain Ontology contains terms for representing pain as defined by the International Association For the Study of Pain (IASP), meaning that pain is both an unpleasant physical sensation and unpleasant emotional experience. It includes terms and axioms to represent the multidimensional aspect of pain, such as temporality (e.g., acute, chronic), qualitative (e.g., sharp, throbbing), extent (e.g., local, widespread), biological mechanism (e.g., nociceptive, neuropathic), and specific anatomical locations (e.g., back, knee). From 4f768633ae7004ed52c633cc7f60a7905d825db7 Mon Sep 17 00:00:00 2001 From: Bill Duncan Date: Fri, 14 Aug 2026 16:55:07 -0400 Subject: [PATCH 2/2] Update Pain Ontology formats to include JSON edition Removed OBO edition entries and added JSON edition entries for various Pain Ontology versions. --- ontology/pain.md | 24 ++++++++++++------------ 1 file changed, 12 insertions(+), 12 deletions(-) diff --git a/ontology/pain.md b/ontology/pain.md index 91983440f..f02456289 100644 --- a/ontology/pain.md +++ b/ontology/pain.md @@ -18,27 +18,27 @@ products: - id: pain.owl title: The Pain Ontology (OWL edition) description: reasoned version of PAIN released in rdf/xml format -- id: pain.obo - title: The Pain Ontology (OBO edition) - description: reasoned version of PAIN released in OBO format +- id: pain.json + title: The Pain Ontology (JSON edition) + description: reasoned version of PAIN released in JSON format - id: pain-non-classified.owl title: The Pain Ontology, non-classified (OWL edition) description: non-reasoned version of PAIN released in rdf/xml format -- id: pain-non-classified.obo - title: The Pain Ontology, non-classified (OBO edition) - description: non-reasoned version of PAIN released in OBO format +- id: pain-non-classified.json + title: The Pain Ontology, non-classified (JSON edition) + description: non-reasoned version of PAIN released in JSON format - id: pain-base.owl title: The Pain Ontology, base module (OWL edition) description: base module of PAIN released in rdf/xml format -- id: pain-base.obo - title: The Pain Ontology, base module (OBO edition) - description: base module of PAIN released in OBO format +- id: pain-base.json + title: The Pain Ontology, base module (JSON edition) + description: base module of PAIN released in JSON format - id: pain-simple.owl title: The Pain Ontology, simple (OWL edition) description: simplified version of PAIN released in rdf/xml format -- id: pain-simple.obo - title: The Pain Ontology, simple (OBO edition) - description: simplified version of PAIN released in OBO format +- id: pain-simple.json + title: The Pain Ontology, simple (JSON edition) + description: simplified version of PAIN released in JSON format repository: https://github.com/uflcod/pain-ontology tracker: https://github.com/uflcod/pain-ontology/issues activity_status: active