diff --git a/DATABASES.md b/DATABASES.md index 77956af..2994675 100644 --- a/DATABASES.md +++ b/DATABASES.md @@ -16,15 +16,15 @@ Stores user agreements created in Genomics Status, connected to the cost calcula --- -## DEPRECATED: `analysis` +## `application_categories` -Summary statistics from various analysis, likely updated from `Piper` or similar since its not updated anymore. Likely stopped being updated around 2020 or similar. +Listing our application categories and abrevation, with one document per application. Used by the statistics api of genstat which in turn feeds the dashboard. --- -## `application_categories` +## `archiving_status` -Listing our application categories and abrevation, with one document per application. Used by the statistics api of genstat which in turn feeds the dashboard. +A database to track the archiving status of all flowcells handled by the encryption and archiving scripts introduced with Project Helix. Updated by dataflow_encrypt until the status is set to `encrypted`, and then by dataflow_archive which is run nightly. --- @@ -65,12 +65,6 @@ Flowcells database for the Element Bioisciences sequencing instrument. Created b --- -## DEPRECATED `expected_yields` - -One document per run mode and sequencer. Not sure where this is used. - ---- - ## [NOT UPDATED] `flowcells` Illumina flowcells database used for pre HiSeq-X. Not updated after 2016. But still searchable in genstat and also likely possible to list in project lists. @@ -167,10 +161,6 @@ Never made it into use, was supposed to keep track of sample requirements for di --- -## [DEPRECATED] `samples` - -Seems to track and document QC runs. Seems to have stopped udpating around 2016. - ## `sensorpush` Uploades time series data for our freezers and fridges that are connected with a sensorpush sensor. One document per sensor and 24h. Data is uploaded by a script running on ngi_internal polling the sensorpush API. We suspect that the API isn't great and sometimes misses out data, but it could also be sensors that drop out. @@ -191,12 +181,6 @@ Keeps track of which items have been added to the suggestion box. Keeps a link t --- -## [DEPRECATED] `taca_flowcells` - -Abandoned project for taca to uploade flowcells I think. Only one document and uploaded 2015. - ---- - ## `userman` Database to keep track of the Charon users. diff --git a/StatusDB_views/archiving_status/lookup/encrypted_runs.map.js b/StatusDB_views/archiving_status/lookup/encrypted_runs.map.js new file mode 100644 index 0000000..7e1bcc6 --- /dev/null +++ b/StatusDB_views/archiving_status/lookup/encrypted_runs.map.js @@ -0,0 +1,5 @@ +function (doc) { + if (doc.status === "encrypted") { + emit(doc._id, doc.status); + } +} \ No newline at end of file diff --git a/StatusDB_views/archiving_status/lookup/pending_runs.map.js b/StatusDB_views/archiving_status/lookup/pending_runs.map.js new file mode 100644 index 0000000..f89d08f --- /dev/null +++ b/StatusDB_views/archiving_status/lookup/pending_runs.map.js @@ -0,0 +1,5 @@ +function (doc) { + if (doc.status === "pending") { + emit(doc._id, doc.status); + } +} \ No newline at end of file diff --git a/StatusDB_views/archiving_status/lookup/runfolder_id.map.js b/StatusDB_views/archiving_status/lookup/runfolder_id.map.js new file mode 100644 index 0000000..ed2ae2f --- /dev/null +++ b/StatusDB_views/archiving_status/lookup/runfolder_id.map.js @@ -0,0 +1,3 @@ +function (doc) { + emit(doc._id); +} \ No newline at end of file diff --git a/views_config.yaml b/views_config.yaml index 0119769..d09e412 100644 --- a/views_config.yaml +++ b/views_config.yaml @@ -21,93 +21,27 @@ databases: reduce: false scenarios: - stage - analysis: + application_categories: design_docs: - multiqc: - views: - full_doc: - reduce: false - scenarios: - - stage - modules: - reduce: false - scenarios: - - stage - names: - views: - id_to_name: - reduce: false - scenarios: - - stage - process_flow: - views: - KPI: - reduce: true - scenarios: - - stage - KPI_applications: - reduce: true - scenarios: - - stage - project: + general: views: - name2_id: - reduce: false - scenarios: - - stage - name2application: - reduce: false - scenarios: - - stage - name2customer_reference: - reduce: false - scenarios: - - stage - name2no_of_samples: - reduce: false - scenarios: - - stage - name2open_date: - reduce: false - scenarios: - - stage - name2project_id: - reduce: false - scenarios: - - stage - name2reference_genome: - reduce: false - scenarios: - - stage - name2uppnex_id: - reduce: false - scenarios: - - stage - project_id: - reduce: false - scenarios: - - stage - project_name: + app_cat: reduce: false scenarios: - stage - reports: + archiving_status: + design_docs: + lookup: views: - RNA_report: + encrypted_runs: reduce: false scenarios: - stage - samples: - views: - samp_top3: + pending_runs: reduce: false scenarios: - stage - application_categories: - design_docs: - general: - views: - app_cat: + runfolder_id: reduce: false scenarios: - stage @@ -419,18 +353,6 @@ databases: reduce: false scenarios: - stage - expected_yields: - design_docs: - yields: - views: - avg_yield: - reduce: false - scenarios: - - stage - min_yield: - reduce: false - scenarios: - - stage flowcell_status: design_docs: events: @@ -663,14 +585,6 @@ databases: reduce: false scenarios: - stage - kpi: - design_docs: - dashboard: - views: - by_time: - reduce: false - scenarios: - - stage nanopore_runs: design_docs: dashboard: @@ -715,1383 +629,267 @@ databases: reduce: false scenarios: - stage - orderportal_compcent: + people_assignments: design_docs: - account: + current: views: - api_key: + assignments: reduce: false scenarios: - stage - email: + pricing_exchange_rates: + design_docs: + entire_document: + views: + by_date: reduce: false scenarios: - stage - first_name: + project_creation_forms: + design_docs: + by_creation_date: + views: + not_retired: reduce: false scenarios: - stage - last_name: + valid: reduce: false scenarios: - stage - login: + summary: + views: + all: reduce: false scenarios: - stage - role: - reduce: false + projects: + design_docs: + date: + views: + creation_time_v: + reduce: true scenarios: - stage - status: - reduce: false + m_bp_delivered: + reduce: true scenarios: - stage - university: - reduce: false + genomics-dashboard: + views: + dates_and_load_per_sample: + reduce: true scenarios: - stage - event: - views: - date: - reduce: false + open_application_count_projects: + reduce: true scenarios: - stage - file: - views: - name: - reduce: false + open_application_count_samples: + reduce: true scenarios: - stage - form: - views: - disabled: - reduce: false + open_application_count_seq_projects: + reduce: true scenarios: - stage - enabled: - reduce: false + year_affiliation_count_projects: + reduce: true scenarios: - stage - modified: - reduce: false + year_application_count: + reduce: true scenarios: - stage - pending: - reduce: false + year_application_count_samples: + reduce: true scenarios: - stage - group: - views: - invited: - reduce: false + year_deliverytime_count_projects: + reduce: true scenarios: - stage - member: - reduce: false + year_deliverytime_median_by_application: + reduce: true scenarios: - stage - modified: + year_seq_application_count: reduce: true scenarios: - stage - owner: - reduce: false + year_seq_application_count_samples: + reduce: true scenarios: - stage - info: + invoicing: + views: {} + kpi_external: views: - menu: - reduce: false + KPI1: + reduce: true scenarios: - stage - name: - reduce: false + KPI1_1: + reduce: true scenarios: - stage - log: - views: - account: - reduce: false + KPI2: + reduce: true scenarios: - stage - entity: - reduce: false + KPI3: + reduce: true scenarios: - stage - login_failure: + KPI3_1: reduce: false scenarios: - stage - modified: + applications_projects: + reduce: true + scenarios: + - stage + applications_samples: reduce: false scenarios: - stage - message: - views: - modified: + date_affiliation: reduce: false scenarios: - stage - recipient: + projects: reduce: true scenarios: - stage - unsent: + names: + views: + id_to_name: reduce: false scenarios: - stage - meta: - views: - id: + name: reduce: false scenarios: - stage - news: + order_portal: views: - modified: + ProjectID_to_PortalID: reduce: false scenarios: - stage - order: + process_flow: views: - form: + KPI: reduce: true scenarios: - stage - identifier: - reduce: false - scenarios: - - stage - keyword: - reduce: false - scenarios: - - stage - modified: - reduce: false + KPI_appl_pf_dates_sampl_lanes: + reduce: true scenarios: - stage - owner: + KPI_applications: reduce: true scenarios: - stage - owner_status: + KPI_applications_test: reduce: true scenarios: - stage - status: + project: + views: + applications: reduce: true scenarios: - stage - tag: + caliper_links: reduce: false scenarios: - stage - title: + controls: reduce: false scenarios: - stage - text: - views: - name: + dailyread_dates: reduce: false scenarios: - stage - orderportal_cryoem: - design_docs: - account: - views: - api_key: + date_applications: reduce: false scenarios: - stage - email: + date_samples_applications: reduce: false scenarios: - stage - first_name: - reduce: false + details_count: + reduce: true scenarios: - stage - last_name: + frag_an_links: reduce: false scenarios: - stage - login: + id_name_dates: reduce: false scenarios: - stage - role: + lib_const_meth: reduce: false scenarios: - stage - status: + project_dates: reduce: false scenarios: - stage - university: + project_id: reduce: false scenarios: - stage - event: - views: - date: + project_name: reduce: false scenarios: - stage - fields: - views: - pi_identifier: + sample_list: reduce: false scenarios: - stage - file: - views: - name: + samples: reduce: false scenarios: - stage - form: - views: - disabled: - reduce: false + samples_applications: + reduce: true scenarios: - stage - enabled: + staged_files_sum: reduce: false scenarios: - stage - modified: + status_lanes_ordered: reduce: false scenarios: - stage - pending: + summary: reduce: false scenarios: - stage - group: - views: - invited: - reduce: false + summary_dates: + reduce: true scenarios: - stage - member: + summary_develop: reduce: false scenarios: - stage - modified: - reduce: true + summary_status: + reduce: false scenarios: - stage - owner: + summary_with_sources: reduce: false scenarios: - stage - info: - views: - menu: - reduce: false - scenarios: - - stage - name: - reduce: false - scenarios: - - stage - log: - views: - account: - reduce: false - scenarios: - - stage - entity: - reduce: false - scenarios: - - stage - login_failure: - reduce: false - scenarios: - - stage - modified: - reduce: false - scenarios: - - stage - message: - views: - modified: - reduce: false - scenarios: - - stage - recipient: - reduce: true - scenarios: - - stage - unsent: - reduce: false - scenarios: - - stage - meta: - views: - id: - reduce: false - scenarios: - - stage - news: - views: - modified: - reduce: false - scenarios: - - stage - order: - views: - form: - reduce: true - scenarios: - - stage - identifier: - reduce: false - scenarios: - - stage - keyword: - reduce: false - scenarios: - - stage - modified: - reduce: false - scenarios: - - stage - owner: - reduce: true - scenarios: - - stage - owner_status: - reduce: true - scenarios: - - stage - status: - reduce: true - scenarios: - - stage - tag: - reduce: false - scenarios: - - stage - title: - reduce: false - scenarios: - - stage - text: - views: - name: - reduce: false - scenarios: - - stage - orderportal_demo: - design_docs: - account: - views: - api_key: - reduce: false - scenarios: - - stage - email: - reduce: false - scenarios: - - stage - first_name: - reduce: false - scenarios: - - stage - last_name: - reduce: false - scenarios: - - stage - login: - reduce: false - scenarios: - - stage - role: - reduce: false - scenarios: - - stage - status: - reduce: false - scenarios: - - stage - university: - reduce: false - scenarios: - - stage - event: - views: - date: - reduce: false - scenarios: - - stage - file: - views: - name: - reduce: false - scenarios: - - stage - form: - views: - disabled: - reduce: false - scenarios: - - stage - enabled: - reduce: false - scenarios: - - stage - modified: - reduce: false - scenarios: - - stage - pending: - reduce: false - scenarios: - - stage - group: - views: - invited: - reduce: false - scenarios: - - stage - member: - reduce: false - scenarios: - - stage - modified: - reduce: true - scenarios: - - stage - owner: - reduce: false - scenarios: - - stage - info: - views: - menu: - reduce: false - scenarios: - - stage - name: - reduce: false - scenarios: - - stage - log: - views: - account: - reduce: false - scenarios: - - stage - entity: - reduce: false - scenarios: - - stage - login_failure: - reduce: false - scenarios: - - stage - modified: - reduce: false - scenarios: - - stage - message: - views: - modified: - reduce: false - scenarios: - - stage - recipient: - reduce: true - scenarios: - - stage - unsent: - reduce: false - scenarios: - - stage - meta: - views: - id: - reduce: false - scenarios: - - stage - news: - views: - modified: - reduce: false - scenarios: - - stage - order: - views: - form: - reduce: true - scenarios: - - stage - identifier: - reduce: false - scenarios: - - stage - keyword: - reduce: false - scenarios: - - stage - modified: - reduce: false - scenarios: - - stage - owner: - reduce: true - scenarios: - - stage - owner_status: - reduce: true - scenarios: - - stage - status: - reduce: true - scenarios: - - stage - tag: - reduce: false - scenarios: - - stage - title: - reduce: false - scenarios: - - stage - text: - views: - name: - reduce: false - scenarios: - - stage - orderportal_natproj: - design_docs: - account: - views: - api_key: - reduce: false - scenarios: - - stage - email: - reduce: false - scenarios: - - stage - first_name: - reduce: false - scenarios: - - stage - last_name: - reduce: false - scenarios: - - stage - login: - reduce: false - scenarios: - - stage - role: - reduce: false - scenarios: - - stage - status: - reduce: false - scenarios: - - stage - university: - reduce: false - scenarios: - - stage - event: - views: - date: - reduce: false - scenarios: - - stage - file: - views: - name: - reduce: false - scenarios: - - stage - form: - views: - disabled: - reduce: false - scenarios: - - stage - enabled: - reduce: false - scenarios: - - stage - modified: - reduce: false - scenarios: - - stage - pending: - reduce: false - scenarios: - - stage - group: - views: - invited: - reduce: false - scenarios: - - stage - member: - reduce: false - scenarios: - - stage - modified: - reduce: true - scenarios: - - stage - owner: - reduce: false - scenarios: - - stage - info: - views: - menu: - reduce: false - scenarios: - - stage - name: - reduce: false - scenarios: - - stage - log: - views: - account: - reduce: false - scenarios: - - stage - entity: - reduce: false - scenarios: - - stage - login_failure: - reduce: false - scenarios: - - stage - modified: - reduce: false - scenarios: - - stage - message: - views: - modified: - reduce: false - scenarios: - - stage - recipient: - reduce: true - scenarios: - - stage - unsent: - reduce: false - scenarios: - - stage - meta: - views: - id: - reduce: false - scenarios: - - stage - news: - views: - modified: - reduce: false - scenarios: - - stage - order: - views: - form: - reduce: true - scenarios: - - stage - identifier: - reduce: false - scenarios: - - stage - keyword: - reduce: false - scenarios: - - stage - modified: - reduce: false - scenarios: - - stage - owner: - reduce: true - scenarios: - - stage - owner_status: - reduce: true - scenarios: - - stage - status: - reduce: true - scenarios: - - stage - tag: - reduce: false - scenarios: - - stage - title: - reduce: false - scenarios: - - stage - text: - views: - name: - reduce: false - scenarios: - - stage - orderportal_ngi: - design_docs: - account: - views: - api_key: - reduce: false - scenarios: - - stage - email: - reduce: false - scenarios: - - stage - first_name: - reduce: false - scenarios: - - stage - last_name: - reduce: false - scenarios: - - stage - login: - reduce: false - scenarios: - - stage - role: - reduce: false - scenarios: - - stage - status: - reduce: false - scenarios: - - stage - university: - reduce: false - scenarios: - - stage - event: - views: - date: - reduce: false - scenarios: - - stage - fields: - views: - Owner: - reduce: false - scenarios: - - stage - Status: - reduce: false - scenarios: - - stage - file: - views: - name: - reduce: false - scenarios: - - stage - form: - views: - disabled: - reduce: false - scenarios: - - stage - enabled: - reduce: false - scenarios: - - stage - modified: - reduce: false - scenarios: - - stage - pending: - reduce: false - scenarios: - - stage - group: - views: - invited: - reduce: false - scenarios: - - stage - member: - reduce: false - scenarios: - - stage - modified: - reduce: true - scenarios: - - stage - owner: - reduce: false - scenarios: - - stage - info: - views: - menu: - reduce: false - scenarios: - - stage - name: - reduce: false - scenarios: - - stage - log: - views: - account: - reduce: false - scenarios: - - stage - entity: - reduce: false - scenarios: - - stage - login_failure: - reduce: false - scenarios: - - stage - modified: - reduce: false - scenarios: - - stage - message: - views: - modified: - reduce: false - scenarios: - - stage - recipient: - reduce: true - scenarios: - - stage - unsent: - reduce: false - scenarios: - - stage - meta: - views: - id: - reduce: false - scenarios: - - stage - news: - views: - modified: - reduce: false - scenarios: - - stage - order: - views: - form: - reduce: true - scenarios: - - stage - identifier: - reduce: false - scenarios: - - stage - keyword: - reduce: false - scenarios: - - stage - modified: - reduce: false - scenarios: - - stage - owner: - reduce: true - scenarios: - - stage - owner_status: - reduce: true - scenarios: - - stage - status: - reduce: true - scenarios: - - stage - tag: - reduce: false - scenarios: - - stage - title: - reduce: false - scenarios: - - stage - taca: - views: - project_id_to_pi_email: - reduce: false - scenarios: - - stage - text: - views: - name: - reduce: false - scenarios: - - stage - orderportal_nmi: - design_docs: - account: - views: - api_key: - reduce: false - scenarios: - - stage - email: - reduce: false - scenarios: - - stage - first_name: - reduce: false - scenarios: - - stage - last_name: - reduce: false - scenarios: - - stage - login: - reduce: false - scenarios: - - stage - role: - reduce: false - scenarios: - - stage - status: - reduce: false - scenarios: - - stage - university: - reduce: false - scenarios: - - stage - event: - views: - date: - reduce: false - scenarios: - - stage - file: - views: - name: - reduce: false - scenarios: - - stage - form: - views: - disabled: - reduce: false - scenarios: - - stage - enabled: - reduce: false - scenarios: - - stage - modified: - reduce: false - scenarios: - - stage - pending: - reduce: false - scenarios: - - stage - group: - views: - invited: - reduce: false - scenarios: - - stage - member: - reduce: false - scenarios: - - stage - modified: - reduce: true - scenarios: - - stage - owner: - reduce: false - scenarios: - - stage - info: - views: - menu: - reduce: false - scenarios: - - stage - name: - reduce: false - scenarios: - - stage - log: - views: - account: - reduce: false - scenarios: - - stage - entity: - reduce: false - scenarios: - - stage - login_failure: - reduce: false - scenarios: - - stage - modified: - reduce: false - scenarios: - - stage - message: - views: - modified: - reduce: false - scenarios: - - stage - recipient: - reduce: true - scenarios: - - stage - unsent: - reduce: false - scenarios: - - stage - meta: - views: - id: - reduce: false - scenarios: - - stage - news: - views: - modified: - reduce: false - scenarios: - - stage - order: - views: - form: - reduce: true - scenarios: - - stage - identifier: - reduce: false - scenarios: - - stage - keyword: - reduce: false - scenarios: - - stage - modified: - reduce: false - scenarios: - - stage - owner: - reduce: true - scenarios: - - stage - owner_status: - reduce: true - scenarios: - - stage - status: - reduce: true - scenarios: - - stage - tag: - reduce: false - scenarios: - - stage - title: - reduce: false - scenarios: - - stage - text: - views: - name: - reduce: false - scenarios: - - stage - people_assignments: - design_docs: - current: - views: - assignments: - reduce: false - scenarios: - - stage - pricing_exchange_rates: - design_docs: - entire_document: - views: - by_date: - reduce: false - scenarios: - - stage - project_creation_forms: - design_docs: - by_creation_date: - views: - not_retired: - reduce: false - scenarios: - - stage - valid: - reduce: false - scenarios: - - stage - summary: - views: - all: - reduce: false - scenarios: - - stage - projects: - design_docs: - daily_read: - views: {} - date: - views: - creation_time_v: - reduce: true - scenarios: - - stage - m_bp_delivered: - reduce: true - scenarios: - - stage - genomics-dashboard: - views: - dates_and_load_per_sample: - reduce: true - scenarios: - - stage - open_application_count_projects: - reduce: true - scenarios: - - stage - open_application_count_samples: - reduce: true - scenarios: - - stage - open_application_count_seq_projects: - reduce: true - scenarios: - - stage - year_affiliation_count_projects: - reduce: true - scenarios: - - stage - year_application_count: - reduce: true - scenarios: - - stage - year_application_count_samples: - reduce: true - scenarios: - - stage - year_deliverytime_count_projects: - reduce: true - scenarios: - - stage - year_deliverytime_median_by_application: - reduce: true - scenarios: - - stage - year_seq_application_count: - reduce: true - scenarios: - - stage - year_seq_application_count_samples: - reduce: true - scenarios: - - stage - invoicing: - views: {} - kpi_external: - views: - KPI1: - reduce: true - scenarios: - - stage - KPI1_1: - reduce: true - scenarios: - - stage - KPI2: - reduce: true - scenarios: - - stage - KPI3: - reduce: true - scenarios: - - stage - KPI3_1: - reduce: false - scenarios: - - stage - applications_projects: - reduce: true - scenarios: - - stage - applications_samples: - reduce: false - scenarios: - - stage - date_affiliation: - reduce: false - scenarios: - - stage - projects: - reduce: true - scenarios: - - stage - names: - views: - id_to_name: - reduce: false - scenarios: - - stage - name: - reduce: false - scenarios: - - stage - order_portal: - views: - ProjectID_to_PortalID: - reduce: false - scenarios: - - stage - process_flow: - views: - KPI: - reduce: true - scenarios: - - stage - KPI_appl_pf_dates_sampl_lanes: - reduce: true - scenarios: - - stage - KPI_applications: - reduce: true - scenarios: - - stage - KPI_applications_test: - reduce: true - scenarios: - - stage - project: - views: - applications: - reduce: true - scenarios: - - stage - caliper_links: - reduce: false - scenarios: - - stage - controls: - reduce: false - scenarios: - - stage - dailyread_dates: - reduce: false - scenarios: - - stage - date_applications: - reduce: false - scenarios: - - stage - date_samples_applications: - reduce: false - scenarios: - - stage - details_count: - reduce: true - scenarios: - - stage - frag_an_links: - reduce: false - scenarios: - - stage - id_name_dates: - reduce: false - scenarios: - - stage - lib_const_meth: - reduce: false - scenarios: - - stage - project_dates: - reduce: false - scenarios: - - stage - project_id: - reduce: false - scenarios: - - stage - project_name: - reduce: false - scenarios: - - stage - sample_list: - reduce: false - scenarios: - - stage - samples: - reduce: false - scenarios: - - stage - samples_applications: - reduce: true - scenarios: - - stage - staged_files_sum: - reduce: false - scenarios: - - stage - status_lanes_ordered: - reduce: false - scenarios: - - stage - summary: - reduce: false - scenarios: - - stage - summary_dates: - reduce: true - scenarios: - - stage - summary_develop: - reduce: false - scenarios: - - stage - summary_status: - reduce: false - scenarios: - - stage - summary_with_sources: - reduce: false - scenarios: - - stage - projects: + projects: views: appl_proj_sample_preps: reduce: false @@ -2211,66 +1009,6 @@ databases: reduce: false scenarios: - stage - pubrefdb: - design_docs: - publication: - views: - author: - reduce: false - scenarios: - - stage - excluded: - reduce: false - scenarios: - - stage - incomplete: - reduce: false - scenarios: - - stage - journal: - reduce: false - scenarios: - - stage - journals: - reduce: true - scenarios: - - stage - modified: - reduce: false - scenarios: - - stage - published: - reduce: false - scenarios: - - stage - slug: - reduce: false - scenarios: - - stage - tag: - reduce: false - scenarios: - - stage - tags: - reduce: true - scenarios: - - stage - title: - reduce: false - scenarios: - - stage - type: - reduce: false - scenarios: - - stage - xref: - reduce: false - scenarios: - - stage - years: - reduce: true - scenarios: - - stage reference: design_docs: documents: @@ -2343,170 +1081,6 @@ databases: reduce: false scenarios: - stage - samples: - design_docs: - barcodes: - views: - date_read_counts: - reduce: true - scenarios: - - stage - flowcell: - reduce: true - scenarios: - - stage - flowcell_sample: - reduce: true - scenarios: - - stage - flowcells: - reduce: true - scenarios: - - stage - read_conts: - reduce: true - scenarios: - - stage - read_counts: - reduce: true - scenarios: - - stage - bc_name: - views: - bc_count: - reduce: false - scenarios: - - stage - contamination: - views: - Serch_by_proj_name: - reduce: false - scenarios: - - stage - fastq_scr: - reduce: false - scenarios: - - stage - index96_screen: - reduce: false - scenarios: - - stage - dates: - views: - count: - reduce: true - scenarios: - - stage - flowcell: - views: - name: - reduce: true - scenarios: - - stage - lanes: - views: - count: - reduce: true - scenarios: - - stage - names: - views: - id_to_name: - reduce: false - scenarios: - - stage - id_to_proj: - reduce: false - scenarios: - - stage - id_to_proj_id: - reduce: false - scenarios: - - stage - name: - reduce: false - scenarios: - - stage - name_fc: - reduce: true - scenarios: - - stage - name_fc_proj: - reduce: true - scenarios: - - stage - name_proj: - reduce: true - scenarios: - - stage - name_to_id: - reduce: false - scenarios: - - stage - proj_fc_sample: - reduce: false - scenarios: - - stage - runs: - reduce: true - scenarios: - - stage - samplename_run: - reduce: true - scenarios: - - stage - qc: - views: - alignment_summary: - reduce: false - scenarios: - - stage - coverage: - reduce: false - scenarios: - - stage - date_reads_per_qv: - reduce: false - scenarios: - - stage - insert_size_distribution: - reduce: false - scenarios: - - stage - qc_summary: - reduce: false - scenarios: - - stage - reads_per_qv: - reduce: false - scenarios: - - stage - summary: - reduce: true - scenarios: - - stage - sample: - views: - INS_metrics: - reduce: false - scenarios: - - stage - samples: - views: - read_counts: - reduce: true - scenarios: - - stage - time: - views: - checkpoints: - reduce: false - scenarios: - - stage - last_updated: - reduce: false - scenarios: - - stage sensorpush: design_docs: entire_document: @@ -2571,54 +1145,6 @@ databases: reduce: false scenarios: - stage - taca_flowcells: - design_docs: - run: - views: - id_status: - reduce: false - scenarios: - - stage - status: - views: - archived: - reduce: false - scenarios: - - stage - archiving: - reduce: false - scenarios: - - stage - sequencing: - reduce: false - scenarios: - - stage - uppmax: - design_docs: - status: - views: - project_cpu_usage_over_time: - reduce: false - scenarios: - - stage - project_quota_usage_over_time: - reduce: false - scenarios: - - stage - projects: - reduce: true - scenarios: - - stage - time: - views: - last_updated: - reduce: false - scenarios: - - stage - last_updated_full_doc: - reduce: false - scenarios: - - stage userman: design_docs: log: