Running the tool

[Syrest123]

I have activated the environment created when installing the pipeline but it brings these error messages when I try to run it

usage: conda [-h] [-v] [--no-plugins] [-V] COMMAND ...
conda: error: argument COMMAND: invalid choice: 'activate' (choose from 'clean', 'compare', 'config', 'create', 'info', 'init', 'install', 'list', 'notices', 'package', 'remove', 'uninstall', 'rename', 'run', 'search', 'update', 'upgrade', 'content-trust', 'doctor', 'repoquery', 'env')
/home/syrus/miniconda3/envs/HIV-DRIVES/accessories/bin/HIV-DRIVES: line 591: bowtie2: command not found
/home/syrus/miniconda3/envs/HIV-DRIVES/accessories/bin/HIV-DRIVES: line 592: samtools: command not found
/home/syrus/miniconda3/envs/HIV-DRIVES/accessories/bin/HIV-DRIVES: line 592: samtools: command not found
/home/syrus/miniconda3/envs/HIV-DRIVES/accessories/bin/HIV-DRIVES: line 593: samtools: command not found
/home/syrus/miniconda3/envs/HIV-DRIVES/accessories/bin/HIV-DRIVES: line 593: samtools: command not found
rm: cannot remove 'HIV-DR/HIV-DR_mapped_and_unmapped.sam': No such file or directory
/home/syrus/miniconda3/envs/HIV-DRIVES/accessories/bin/HIV-DRIVES: line 599: quasitools: command not found
gzip: HIV-DR/patient_free_reads/: No such file or directory
gzip: HIV-DR/patient_reads/: No such file or directory
sed: can't read HIV-DR/results/hydra_output/consensus.fasta: No such file or directory
No consensus generated