main.cpp

#include <stdio.h>
#include <stdlib.h>
#include <omp.h>
#include "Image/image.h"
#include "Util/cmdLineParser.h"

void ShowUsage(char* ex){
	printf("Usage %s:\n",ex);
	printf("\t--in <input image> --out <output image>\n");
	printf("\t[--axoplasmicreticula]\n"); 
}
void mexFunction( int nlhs , mxArray *plhs[] , int argc , const mxArray *prhs[] ) {

	if (argc == 0)
	{
		ShowUsage("FindReticula") ;
		return ;
	}
	
	//char** argv = new char*[argc] ;
	//for ( int i = 0 ; i < argc ; i++ )
	//{
	//	char* arg = (char *)mxArrayToString(prhs[i]) ;
	//	argv[i] = strdup(arg) ;
	//	printf("%s\n", argv[i]);
	//	mxFree(arg);
	//}
	//
	//cmdLineString In , Out ;

	//cmdLineReadable  APR  ;
	//
	//char* paramNames[]={
	//	"in","out",
	//	"axoplasmicreticula"
	//};

	//cmdLineReadable* params[]=
	//{
	//	&In,&Out,
	//	&APR
	//};

	////cmdLineParse(argc-1,&argv[1],paramNames,sizeof(paramNames)/sizeof(char*),params); // <-- CPP
	//cmdLineParse(argc,&argv[0],paramNames,sizeof(paramNames)/sizeof(char*),params); // <-- MATLAB

	//// Check that the input and output files have been set
	//if(!In.set || !Out.set){
	//	if(!In.set)	{printf("Input image was not set\n");}
	//	else		{printf("Output image was not set\n");}
	//	ShowUsage("FindReticula") ;
	//	return ; //EXIT_FAILURE;
	//}

	//if(APR.set){

		MatlabImage image(prhs[1]) ;
		MatlabImage out(prhs[3]) ;

		if (!image.AxoplasmicReticula(image , out)) {
			printf("Could not compute axoplasmic reticula in the image\n");
		}
		/*return ;
	}*/

	return ; //EXIT_SUCCESS;
}